Factsheet for Solyc12g019200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019190.1.1	Tomato	mitochondrion	93.64	93.64
VIT_07s0031g00440.t01	Wine grape	nucleus	19.09	19.09
Solyc12g010500.1.1	Tomato	nucleus	12.27	15.08
Solyc09g007620.1.1	Tomato	nucleus	10.91	13.71
Solyc12g040390.1.1	Tomato	nucleus, plastid	15.45	11.15
Solyc03g026150.2.1	Tomato	nucleus	10.91	10.13
Solyc03g118840.2.1	Tomato	nucleus	17.27	9.82
Solyc12g014070.1.1	Tomato	nucleus	22.73	9.35
Solyc11g062260.1.1	Tomato	nucleus	10.0	8.94
Solyc08g006460.2.1	Tomato	nucleus	20.91	8.66
Solyc09g007530.2.1	Tomato	nucleus	20.0	8.12
Solyc12g096420.1.1	Tomato	nucleus	19.55	7.8
Solyc10g007140.2.1	Tomato	nucleus	18.18	7.71
Solyc04g078680.2.1	Tomato	nucleus	21.82	6.65
Solyc12g088740.1.1	Tomato	nucleus	20.45	6.49
Solyc01g087060.2.1	Tomato	nucleus	10.91	6.49
Solyc01g107940.2.1	Tomato	nucleus	20.0	6.22
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	20.45	6.2
Solyc01g107930.2.1	Tomato	nucleus	20.0	6.13
Solyc05g008840.1.1	Tomato	nucleus, plastid	5.91	5.91
Solyc07g062720.1.1	Tomato	nucleus	20.0	5.68
Solyc02g005480.2.1	Tomato	nucleus	4.55	3.73

Protein Annotations

EnsemblPlants:Solyc12g019200.1.1	EnsemblPlantsGene:Solyc12g019200.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF98	PFAM:PF13639	PFscan:PS50089	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00027696F7	UniProt:K4DDE7	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr12:+:9547294..9548500

Molecular Weight (calculated)

25241.4 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.211

Length

220 amino acids

Sequence
(BLAST)

001: MPHRTRTRNI MLRNMTSAAH SSRIYYVRQG FRLNGMVLIV LEYYYSSNGR LTIVLANGTN IYHVSIVPRN HFSNWIPNGI ITNTMTPALP NANNIWSLPY
101: VVMNYASRFA DVNHGPNLMP YPPHRANVHM GLLARQDQAG NVNRGLRREI IFARMNRVMY QLTEISTSDE DTCSICLDYY SDGQIIGSTD CHHTFHFDCI
201: NQWLMQVNSC PICRRTALAV

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.