Factsheet for VIT_07s0031g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	27.73	59.8
VIT_07s0031g00380.t01	Wine grape	cytosol	18.18	57.14
VIT_11s0118g00640.t01	Wine grape	nucleus	27.27	50.42
VIT_07s0031g00370.t01	Wine grape	mitochondrion	30.0	45.52
VIT_16s0022g00290.t01	Wine grape	nucleus	13.18	38.16
VIT_07s0031g00390.t01	Wine grape	nucleus	32.27	29.1
VIT_18s0001g02280.t01	Wine grape	nucleus	20.45	21.74
Solyc12g019200.1.1	Tomato	mitochondrion	19.09	19.09
Solyc12g019190.1.1	Tomato	mitochondrion	19.09	19.09
VIT_17s0000g03210.t01	Wine grape	nucleus	31.82	18.87
VIT_01s0011g04080.t01	Wine grape	nucleus	28.64	17.95
VIT_12s0028g01220.t01	Wine grape	nucleus	16.82	16.89
VIT_06s0004g01930.t01	Wine grape	nucleus	18.18	15.87
VIT_13s0064g01030.t01	Wine grape	nucleus	17.27	15.38
VIT_10s0042g00580.t01	Wine grape	nucleus	21.36	15.26
VIT_04s0008g02390.t01	Wine grape	nucleus	33.18	13.27
VIT_18s0001g10260.t01	Wine grape	nucleus	43.64	13.08
VIT_03s0063g00160.t01	Wine grape	nucleus	40.91	12.26
VIT_19s0014g01850.t01	Wine grape	nucleus	28.64	11.71
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	20.45	11.45
VIT_08s0040g02160.t01	Wine grape	nucleus	26.82	10.81
VIT_03s0097g00680.t01	Wine grape	nucleus	20.0	10.45
VIT_03s0088g01090.t01	Wine grape	nucleus	21.36	10.28
VIT_13s0019g04100.t01	Wine grape	extracellular	26.36	10.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM473198	ProteinID:CAN79375	ProteinID:CAN79375.1	ProteinID:CBI21409
ProteinID:CBI21409.3	UniProt:D7SVW0	EMBL:FN595233	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00015C9F7C
ArrayExpress:VIT_07s0031g00440	EnsemblPlantsGene:VIT_07s0031g00440	EnsemblPlants:VIT_07s0031g00440.t01	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr7:+:16651426..16652337

Molecular Weight (calculated)

24251.3 Da

IEP (calculated)

3.919

GRAVY (calculated)

-0.348

Length

220 amino acids

Sequence
(BLAST)

001: MVVYQLLRLL GQDVLVDSPS HQAGSNSAPA HQAASILELR TQPPTNLAPV SEEAASLAPA TWLPPYLPAL RAATSLAPAN WLPAYLEPAD QVENNFAPVS
101: WDENDFDEEE EDDDYNNEDM RADVDNMSYE ELLALEDHIG NVSTGLNEDA IKAKLKPKKY SSFTMGPPVE GEICCICQEE YEEGETMGIL DCGHEFHSDC
201: IKQWLVQKNL CPICKTAALV

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.