Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64669 | Soybean | nucleus | 54.11 | 55.45 |
| KRH53246 | Soybean | nucleus | 46.86 | 53.01 |
| PGSC0003DMT400020398 | Potato | nucleus | 43.96 | 51.41 |
| Solyc12g010500.1.1 | Tomato | nucleus | 43.96 | 50.84 |
| Bra019499.1-P | Field mustard | nucleus | 39.13 | 49.39 |
| KRH17980 | Soybean | nucleus | 47.83 | 48.77 |
| KRH16389 | Soybean | nucleus | 46.86 | 47.32 |
| CDY67192 | Canola | nucleus | 43.96 | 42.72 |
| CDX77848 | Canola | nucleus | 42.51 | 41.51 |
| AT3G47180.1 | Thale cress | cytosol | 41.55 | 40.95 |
| VIT_07s0031g00400.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 19.32 | 39.22 |
| VIT_11s0118g00640.t01 | Wine grape | nucleus | 19.32 | 33.61 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 11.11 | 30.26 |
| VIT_07s0031g00380.t01 | Wine grape | cytosol | 10.14 | 30.0 |
| VIT_07s0031g00370.t01 | Wine grape | mitochondrion | 20.77 | 29.66 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 41.55 | 27.92 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 32.37 | 26.59 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 26.57 | 25.11 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 28.5 | 23.89 |
| VIT_07s0031g00440.t01 | Wine grape | nucleus | 21.74 | 20.45 |
| VIT_07s0031g00390.t01 | Wine grape | nucleus | 20.77 | 17.62 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 21.26 | 11.86 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 19.81 | 11.68 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 24.64 | 9.48 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 23.67 | 8.97 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 23.67 | 8.91 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 16.91 | 8.91 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 24.15 | 8.85 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 17.39 | 8.55 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 17.87 | 8.1 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 28.02 | 7.9 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 24.64 | 6.95 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB45473 | ProteinID:CCB45473.1 | UniProt:F6H0K1 | EMBL:FN595227 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF112 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000210A047 | ArrayExpress:VIT_18s0001g02280 | EnsemblPlantsGene:VIT_18s0001g02280 | EnsemblPlants:VIT_18s0001g02280.t01 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:2629486..2630245
Molecular Weight (calculated)
23333.3 Da
IEP (calculated)
3.746
GRAVY (calculated)
-0.729
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDDEETKR ASRSVAFTQL NQVASDFALA IALQEQERRA FTTLLPTIFQ TNSDELESDS SDETDDDEDE DSDDDSHDFF PNSHETEEGL EFLEGEGSNS
101: DQDMEEDDID PDQLSYEELI ALGEIVGEES RGLSMEEISA SLRPYTCHSL RSKTAVDRCV ICQVEYEEEE KLVALPCEHP YHADCITKWL QIKKTCPICS
201: TEVSSLP
101: DQDMEEDDID PDQLSYEELI ALGEIVGEES RGLSMEEISA SLRPYTCHSL RSKTAVDRCV ICQVEYEEEE KLVALPCEHP YHADCITKWL QIKKTCPICS
201: TEVSSLP
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.