Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015453_P001 | Maize | cytosol | 97.67 | 97.67 |
| Zm00001d013776_P001 | Maize | cytosol | 96.12 | 96.12 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 48.84 | 68.48 |
| Zm00001d015323_P002 | Maize | cytosol | 57.36 | 65.49 |
| Zm00001d026446_P001 | Maize | cytosol | 32.56 | 22.83 |
| Zm00001d015289_P001 | Maize | nucleus | 92.25 | 21.02 |
| CDY13429 | Canola | cytosol | 40.31 | 20.16 |
| CDX97032 | Canola | plastid | 51.16 | 19.7 |
| CDY71882 | Canola | plastid | 51.16 | 18.86 |
| Bra024009.1-P | Field mustard | nucleus | 25.58 | 18.86 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 50.39 | 17.52 |
| CDX85750 | Canola | nucleus | 48.84 | 16.32 |
| EES04530 | Sorghum | nucleus | 61.24 | 15.25 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 66.67 | 15.25 |
| KRH04957 | Soybean | nucleus | 61.24 | 14.85 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 65.89 | 14.58 |
| CDX95473 | Canola | nucleus | 51.16 | 14.22 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 65.89 | 14.1 |
| GSMUA_Achr10P... | Banana | nucleus | 55.04 | 14.03 |
| CDX88140 | Canola | nucleus | 51.94 | 13.9 |
| KRH16134 | Soybean | nucleus | 59.69 | 13.87 |
| CDY68658 | Canola | nucleus | 50.39 | 13.86 |
| AT5G24870.2 | Thale cress | nucleus | 55.04 | 13.65 |
| Solyc08g006460.2.1 | Tomato | nucleus | 55.81 | 13.56 |
| Os02t0150700-01 | Rice | extracellular | 66.67 | 13.42 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 56.59 | 13.27 |
| PGSC0003DMT400067670 | Potato | nucleus | 54.26 | 13.26 |
| CDX78393 | Canola | nucleus | 50.39 | 13.16 |
| Bra006070.1-P | Field mustard | nucleus | 50.39 | 13.13 |
| KRH52597 | Soybean | nucleus | 55.04 | 13.12 |
| Solyc12g096420.1.1 | Tomato | nucleus | 55.81 | 13.07 |
| CDX70363 | Canola | nucleus | 48.84 | 12.96 |
| CDX97044 | Canola | nucleus | 51.16 | 12.94 |
| KRH61936 | Soybean | nucleus | 55.81 | 12.93 |
| AT5G10650.2 | Thale cress | nucleus | 51.94 | 12.76 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 58.14 | 12.73 |
| Zm00001d021225_P002 | Maize | cytosol | 17.05 | 12.57 |
| Zm00001d014609_P002 | Maize | nucleus | 56.59 | 12.48 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 65.89 | 12.23 |
| Zm00001d024406_P002 | Maize | nucleus | 33.33 | 12.01 |
| PGSC0003DMT400075959 | Potato | nucleus | 50.39 | 11.93 |
| Bra009015.1-P | Field mustard | plastid | 48.06 | 11.63 |
| CDX69813 | Canola | mitochondrion | 48.06 | 11.63 |
| CDY63645 | Canola | nucleus | 41.09 | 11.47 |
| CDY13433 | Canola | nucleus | 41.09 | 11.37 |
| Bra024007.1-P | Field mustard | nucleus | 41.09 | 11.35 |
| Zm00001d026248_P001 | Maize | nucleus | 33.33 | 11.32 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 54.26 | 10.77 |
| AT4G31450.2 | Thale cress | nucleus | 41.09 | 10.66 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 30.23 | 9.82 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 19.38 | 9.33 |
| Zm00001d043784_P002 | Maize | nucleus | 24.81 | 9.25 |
| Zm00001d011636_P001 | Maize | nucleus | 24.03 | 9.17 |
| CDY40109 | Canola | nucleus | 13.18 | 9.14 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 27.13 | 9.11 |
| Zm00001d048301_P001 | Maize | cytosol | 16.28 | 8.71 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 19.38 | 8.71 |
| Zm00001d027868_P004 | Maize | cytosol | 16.28 | 7.78 |
| Zm00001d008649_P003 | Maize | cytosol | 31.01 | 7.59 |
| Zm00001d002080_P002 | Maize | nucleus | 37.98 | 7.39 |
| Zm00001d026445_P001 | Maize | nucleus | 36.43 | 7.18 |
| Zm00001d039769_P002 | Maize | cytosol | 30.23 | 7.08 |
| Zm00001d011541_P004 | Maize | nucleus | 28.68 | 6.98 |
| Zm00001d006226_P001 | Maize | peroxisome | 17.05 | 6.92 |
| Zm00001d002624_P003 | Maize | cytosol | 17.83 | 6.85 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 17.05 | 6.83 |
| Zm00001d025027_P002 | Maize | nucleus | 31.78 | 5.89 |
| Zm00001d009571_P002 | Maize | nucleus | 23.26 | 5.86 |
| Zm00001d004300_P003 | Maize | nucleus | 31.01 | 5.76 |
| Zm00001d039015_P002 | Maize | cytosol | 14.73 | 4.65 |
| Bra009800.1-P | Field mustard | nucleus | 14.73 | 4.63 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 15.5 | 3.25 |
Protein Annotations
| EnsemblPlants:Zm00001d019616_P001 | EnsemblPlants:Zm00001d019616_T001 | EnsemblPlantsGene:Zm00001d019616 | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF60 |
| ProteinID:ONM53413.1 | SEG:seg | UniParc:UPI000842F79E | UniProt:A0A1D6HZA4 | MapMan:35.2 | : |
Description
RING/U-box superfamily protein
Coordinates
chr7:-:46378361..46380493
Molecular Weight (calculated)
14829.8 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.229
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHNLIGERD SHRHITMEGI TEVLVALERI EQQAELTYDQ LLMLEANLFF GAFASYDRHR DMRMDIDDMS YEKLLALEER IGSVSTALSE EQFTKCLKRS
101: IYSQVALEVN KSTVDDMKCS ICQVSGNLT
101: IYSQVALEVN KSTVDDMKCS ICQVSGNLT
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.