Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067670 | Potato | nucleus | 61.1 | 63.07 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 9.54 | 56.52 |
| Zm00001d015453_P001 | Maize | cytosol | 12.11 | 51.16 |
| Zm00001d013776_P001 | Maize | cytosol | 11.93 | 50.39 |
| Zm00001d019616_P001 | Maize | cytosol | 11.93 | 50.39 |
| PGSC0003DMT400079217 | Potato | cytosol | 8.62 | 47.47 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 47.52 | 47.09 |
| CDX97032 | Canola | plastid | 28.62 | 46.57 |
| CDY71882 | Canola | plastid | 28.99 | 45.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.53 | 44.89 |
| CDX85750 | Canola | nucleus | 31.74 | 44.82 |
| KRH16134 | Soybean | nucleus | 44.04 | 43.24 |
| KRH04957 | Soybean | nucleus | 42.02 | 43.05 |
| KRH52597 | Soybean | nucleus | 42.02 | 42.33 |
| CDY68658 | Canola | nucleus | 35.6 | 41.36 |
| CDX95473 | Canola | nucleus | 34.5 | 40.52 |
| CDY40109 | Canola | nucleus | 13.76 | 40.32 |
| CDX78393 | Canola | nucleus | 36.51 | 40.28 |
| CDX88140 | Canola | nucleus | 35.6 | 40.25 |
| Bra006070.1-P | Field mustard | nucleus | 36.33 | 40.0 |
| AT5G24870.2 | Thale cress | nucleus | 37.8 | 39.62 |
| CDX97044 | Canola | nucleus | 36.88 | 39.41 |
| CDX70363 | Canola | nucleus | 35.05 | 39.3 |
| KRH61936 | Soybean | nucleus | 39.27 | 38.42 |
| AT5G10650.2 | Thale cress | nucleus | 36.33 | 37.71 |
| Bra009015.1-P | Field mustard | plastid | 36.7 | 37.52 |
| CDX69813 | Canola | mitochondrion | 36.33 | 37.15 |
| Bra024009.1-P | Field mustard | nucleus | 11.74 | 36.57 |
| CDY13429 | Canola | cytosol | 15.78 | 33.33 |
| Bra009800.1-P | Field mustard | nucleus | 24.4 | 32.44 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 27.89 | 29.57 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 30.64 | 28.89 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 31.01 | 28.84 |
| Os06t0695600-01 | Rice | nucleus | 30.46 | 28.67 |
| KXG20741 | Sorghum | nucleus | 30.83 | 28.47 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 29.91 | 28.45 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 29.36 | 28.37 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 29.91 | 27.96 |
| Zm00001d014609_P002 | Maize | nucleus | 29.91 | 27.86 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 29.72 | 26.87 |
| Zm00001d015289_P001 | Maize | nucleus | 27.34 | 26.33 |
| EES04530 | Sorghum | nucleus | 24.95 | 26.25 |
| PGSC0003DMT400078539 | Potato | plastid | 11.93 | 26.1 |
| PGSC0003DMT400020398 | Potato | nucleus | 8.44 | 25.99 |
| OQU80147 | Sorghum | nucleus | 17.06 | 25.98 |
| EES12797 | Sorghum | nucleus | 17.61 | 25.67 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 17.25 | 25.47 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 27.16 | 25.47 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 17.43 | 25.33 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 17.25 | 25.2 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.06 | 25.0 |
| Zm00001d024406_P002 | Maize | nucleus | 16.33 | 24.86 |
| Os08t0241400-00 | Rice | nucleus | 17.06 | 24.67 |
| Os02t0150700-01 | Rice | extracellular | 28.99 | 24.65 |
| Os04t0603200-01 | Rice | nucleus | 14.31 | 23.71 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 29.54 | 23.17 |
| Zm00001d026248_P001 | Maize | nucleus | 16.15 | 23.16 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 16.33 | 22.42 |
| Bra024007.1-P | Field mustard | nucleus | 18.72 | 21.84 |
| CDY13433 | Canola | nucleus | 18.53 | 21.67 |
| CDY63645 | Canola | nucleus | 18.35 | 21.64 |
| PGSC0003DMT400014732 | Potato | nucleus | 15.23 | 21.39 |
| AT4G31450.2 | Thale cress | nucleus | 18.72 | 20.52 |
| PGSC0003DMT400017553 | Potato | nucleus | 8.99 | 20.16 |
| PGSC0003DMT400082375 | Potato | nucleus | 8.07 | 17.89 |
| PGSC0003DMT400037132 | Potato | nucleus | 7.71 | 17.57 |
| PGSC0003DMT400004449 | Potato | nucleus | 15.96 | 16.05 |
| PGSC0003DMT400039849 | Potato | nucleus | 20.37 | 16.02 |
| PGSC0003DMT400095772 | Potato | cytosol | 5.32 | 15.59 |
| PGSC0003DMT400066252 | Potato | nucleus | 20.0 | 15.24 |
| PGSC0003DMT400020528 | Potato | nucleus | 17.98 | 14.22 |
| PGSC0003DMT400039631 | Potato | nucleus | 13.58 | 13.81 |
| PGSC0003DMT400054921 | Potato | nucleus | 12.48 | 13.1 |
| PGSC0003DMT400032385 | Potato | nucleus | 13.95 | 9.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075959 | EnsemblPlantsGene:PGSC0003DMG400029544 | EntrezGene:102603878 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400029544 | RefSeq:XP_006355184.1 | RefSeq:XP_006355185.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000294CC6D | UniProt:M1CVZ6 | MapMan:35.1 | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029544]
Coordinates
chr8:+:44780457..44784404
Molecular Weight (calculated)
59843.6 Da
IEP (calculated)
7.657
GRAVY (calculated)
-0.706
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVYSGKRAK NGLVAPRRGL RDTADSRDED VQLCSRLECS GRLNHLKSSC VGTKEKSRSF KPTFNASNGK DVVGSSSRTS SVLSVRNARE ESHIKSFSQV
101: GNDQSVISSL NGVPEVTEQI QSSPEYQLNI SSAARDTRSS KARSTEAGHS SGTSSSKPRK IVCHKSGSYN QHTPMHASVS SQSKAIDSGK RPCSSGAGYG
201: LRNLKCKSIS DVLPNNCSTS ESRFSSRDMV KRRNTEGESS SSAKGKKNTK ASQREKHVTR QTRGISISES RSGRNLDYSV NNHALSVQTR RSMNVNSRFR
301: GPVQDSLQTE SSGLVQSLHR PETPDLNLES SSQLFTDGSS SSDFSSYSFP GNDIDDLPSV VPFTSAELGI NRLMNQQALQ RYNMDGVAQV LLALERMEED
401: EELTYEQLLA LETNLLLSGL NFYDQHRDMR LDIDSMSYEE LLALEERMGT VSTALPEEAV SKCLQRSIYQ GMHSELGAFG GDGDEAEIKC SICQEDYVIG
501: DEIGKLECKH GYHMECVQQW LKHKNWCPIC KTSAAASSKL TTAPS
101: GNDQSVISSL NGVPEVTEQI QSSPEYQLNI SSAARDTRSS KARSTEAGHS SGTSSSKPRK IVCHKSGSYN QHTPMHASVS SQSKAIDSGK RPCSSGAGYG
201: LRNLKCKSIS DVLPNNCSTS ESRFSSRDMV KRRNTEGESS SSAKGKKNTK ASQREKHVTR QTRGISISES RSGRNLDYSV NNHALSVQTR RSMNVNSRFR
301: GPVQDSLQTE SSGLVQSLHR PETPDLNLES SSQLFTDGSS SSDFSSYSFP GNDIDDLPSV VPFTSAELGI NRLMNQQALQ RYNMDGVAQV LLALERMEED
401: EELTYEQLLA LETNLLLSGL NFYDQHRDMR LDIDSMSYEE LLALEERMGT VSTALPEEAV SKCLQRSIYQ GMHSELGAFG GDGDEAEIKC SICQEDYVIG
501: DEIGKLECKH GYHMECVQQW LKHKNWCPIC KTSAAASSKL TTAPS
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.