Factsheet for Os02t0150700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G054920.1	Barley	cytosol	11.54	80.43
Zm00001d019616_P001	Maize	cytosol	13.42	66.67
Zm00001d013776_P001	Maize	cytosol	13.42	66.67
Zm00001d015453_P001	Maize	cytosol	13.42	66.67
TraesCS6A01G121400.2	Wheat	nucleus	56.63	62.26
TraesCS6B01G149700.2	Wheat	nucleus	54.45	61.88
TraesCS6D01G111500.2	Wheat	nucleus	57.1	60.7
EES04530	Sorghum	nucleus	46.96	58.11
Zm00001d015289_P001	Maize	nucleus	48.52	54.95
HORVU6Hr1G022370.10	Barley	mitochondrion	56.63	52.23
Os06t0695600-01	Rice	nucleus	47.11	52.16
CDX97032	Canola	plastid	21.37	40.9
CDY71882	Canola	plastid	22.0	40.29
GSMUA_Achr3P05160_001	Banana	nucleus	36.51	39.73
VIT_04s0008g02390.t01	Wine grape	nucleus	30.89	36.0
GSMUA_Achr6P03840_001	Banana	nucleus	20.75	35.85
CDX85750	Canola	nucleus	21.53	35.75
Bra024009.1-P	Field mustard	nucleus	9.67	35.43
Solyc08g006460.2.1	Tomato	nucleus	28.39	34.27
PGSC0003DMT400067670	Potato	nucleus	28.08	34.09
CDX95473	Canola	nucleus	24.49	33.84
Bra006070.1-P	Field mustard	nucleus	25.9	33.54
CDY40109	Canola	nucleus	9.67	33.33
CDX78393	Canola	nucleus	25.59	33.2
KRH04957	Soybean	nucleus	27.46	33.08
CDX70363	Canola	nucleus	24.96	32.92
KRH16134	Soybean	nucleus	28.39	32.79
CDY13429	Canola	cytosol	12.95	32.17
KRH52597	Soybean	nucleus	26.52	31.42
CDY68658	Canola	nucleus	22.93	31.34
CDX97044	Canola	nucleus	24.65	30.98
CDX88140	Canola	nucleus	22.93	30.5
Solyc12g096420.1.1	Tomato	nucleus	26.21	30.49
AT5G24870.2	Thale cress	nucleus	24.65	30.38
AT5G10650.2	Thale cress	nucleus	24.65	30.1
CDX69813	Canola	mitochondrion	24.49	29.46
Bra009015.1-P	Field mustard	plastid	24.34	29.27
PGSC0003DMT400075959	Potato	nucleus	24.65	28.99
GSMUA_Achr10P...	Banana	nucleus	22.62	28.66
KRH61936	Soybean	nucleus	23.4	26.93
Os08t0241400-00	Rice	nucleus	15.6	26.53
GSMUA_Achr7P15850_001	Banana	nucleus	23.87	23.54
Bra009800.1-P	Field mustard	nucleus	14.82	23.17
Os04t0603200-01	Rice	nucleus	11.86	23.1
Os05t0550000-00	Rice	nucleus	13.1	23.08
CDY63645	Canola	nucleus	14.51	20.13
Bra024007.1-P	Field mustard	nucleus	14.66	20.13
AT4G31450.2	Thale cress	nucleus	15.6	20.12
CDY13433	Canola	nucleus	14.51	19.96
Os04t0571200-01	Rice	nucleus	7.8	19.68
Os03t0173900-01	Rice	nucleus	7.18	18.4
Os08t0548300-01	Rice	nucleus	8.58	18.03
Os01t0159300-01	Rice	nucleus	13.57	17.37
Os09t0535100-01	Rice	nucleus	8.58	16.92
Os05t0564300-01	Rice	nucleus	12.95	16.6
Os01t0667700-02	Rice	nucleus	13.42	16.41
Os04t0648800-01	Rice	nucleus	16.38	15.74
Os04t0185500-01	Rice	nucleus	17.0	15.37
Os06t0125800-01	Rice	nucleus	6.24	15.33
Os05t0163400-03	Rice	nucleus	12.48	15.01

Protein Annotations

EnsemblPlants:Os02t0150700-01	EnsemblPlantsGene:Os02g0150700	Gene3D:3.30.40.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0043531	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR22937	PANTHER:PTHR22937:SF60	PFAM:PF13639	PFscan:PS50089	ProteinID:BAS77005.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0003939755	UniProt:A0A0P0VES7	MapMan:35.1	:

Description

RING finger proteinZinc finger, RING-type domain containing protein. (Os02t0150700-01)

Coordinates

chr2:+:2791281..2795406

Molecular Weight (calculated)

71222.0 Da

IEP (calculated)

8.732

GRAVY (calculated)

-0.696

Length

641 amino acids

Sequence
(BLAST)

001: AVAFVVRRRK RGCALSDRFL AIRPDWRKLG VSFFFLFLVQ GSEKFRTGGG AHIRESVPPN HMEDYPSGRS KAAIGFLRRG GGFSSRNQST EERTIQNYDG
101: PGITTRLNPM KTRLSDNQER PRYLRDSFRS STSMAIHGSS SKVPLRKFGD EKRRQTLLAG VDIAESSSRN AGGKHLEGSN KRIVVDDRSS DVLHTETEGL
201: ATEQDQLIAP NAGVSDSASS SDISEHAVES LVRSAAPSSR TRRQKDKELN LGQSGVCSSS CTNRPTISRY APADVKRPCN HASGVQQHGH NNLDCTSVPN
301: FLPSGCSSGS VYSRRFDAMR KRTSDGGSFS RSRGLSGTAS LDDSPPAYPA IAGPRIRTTT TERASQQNAL RSRRNFQDSA VSVRTRRPPW GARFRISEER
401: EDGMISQRDS SIGNQQSDQV HSSSEEASTE SSSRPFSAEL PHAIYSSRGE GSNAFTARRR RSSSLYEERP PQTFHDLFRE RNGRRHISIE GIAEVLLALD
501: RIEQEAELTY EQLMVLETNI LLGAFTSHDQ HSDMRMDIDN MSYEELLALG DRIGSVSTAL SEEQFVKCLR RSIYIPVATK ANAQVVDDIK CSICQEEYIE
601: GEEVGRLGCE HQYHVCCIHQ WLRQKNWCPI CKASAEPSTV S

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.