Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88140 | Canola | nucleus | 95.31 | 92.74 |
| Bra009800.1-P | Field mustard | nucleus | 80.17 | 91.71 |
| AT5G24870.2 | Thale cress | nucleus | 77.83 | 70.19 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 11.09 | 56.52 |
| CDX97032 | Canola | plastid | 39.87 | 55.82 |
| CDY71882 | Canola | plastid | 39.87 | 53.43 |
| CDY40109 | Canola | nucleus | 20.9 | 52.69 |
| CDX85750 | Canola | nucleus | 43.28 | 52.59 |
| CDX70363 | Canola | nucleus | 52.67 | 50.82 |
| Zm00001d019616_P001 | Maize | cytosol | 13.86 | 50.39 |
| Zm00001d015453_P001 | Maize | cytosol | 13.86 | 50.39 |
| CDX78393 | Canola | nucleus | 52.67 | 50.0 |
| CDX95473 | Canola | nucleus | 49.25 | 49.78 |
| Zm00001d013776_P001 | Maize | cytosol | 13.65 | 49.61 |
| CDX97044 | Canola | nucleus | 53.09 | 48.82 |
| CDX69813 | Canola | mitochondrion | 52.67 | 46.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.75 | 45.33 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 48.19 | 41.09 |
| KRH52597 | Soybean | nucleus | 43.07 | 37.34 |
| KRH04957 | Soybean | nucleus | 42.0 | 37.03 |
| PGSC0003DMT400075959 | Potato | nucleus | 41.36 | 35.6 |
| KRH16134 | Soybean | nucleus | 42.0 | 35.5 |
| PGSC0003DMT400067670 | Potato | nucleus | 39.66 | 35.23 |
| Solyc08g006460.2.1 | Tomato | nucleus | 39.02 | 34.46 |
| Solyc12g096420.1.1 | Tomato | nucleus | 39.66 | 33.76 |
| KRH61936 | Soybean | nucleus | 39.02 | 32.85 |
| CDY13429 | Canola | cytosol | 17.27 | 31.4 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 31.13 | 28.4 |
| Os06t0695600-01 | Rice | nucleus | 34.54 | 27.98 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 33.26 | 27.66 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 33.48 | 27.4 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.69 | 27.34 |
| KXG20741 | Sorghum | nucleus | 34.12 | 27.12 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 33.69 | 26.96 |
| Zm00001d014609_P002 | Maize | nucleus | 33.48 | 26.84 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 33.26 | 26.76 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 33.05 | 25.7 |
| Zm00001d015289_P001 | Maize | nucleus | 30.06 | 24.91 |
| EES04530 | Sorghum | nucleus | 27.08 | 24.52 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 29.21 | 23.58 |
| EES12797 | Sorghum | nucleus | 18.55 | 23.26 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 18.55 | 23.2 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 18.34 | 23.06 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 18.12 | 23.04 |
| Os02t0150700-01 | Rice | extracellular | 31.34 | 22.93 |
| Zm00001d024406_P002 | Maize | nucleus | 17.48 | 22.91 |
| CDX73013 | Canola | plastid | 17.27 | 22.82 |
| CDY60141 | Canola | plastid | 17.27 | 22.69 |
| OQU80147 | Sorghum | nucleus | 17.27 | 22.63 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 17.91 | 22.58 |
| Os08t0241400-00 | Rice | nucleus | 18.12 | 22.55 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 32.2 | 21.73 |
| Zm00001d026248_P001 | Maize | nucleus | 17.48 | 21.58 |
| CDY11092 | Canola | cytosol, plastid | 15.99 | 21.55 |
| CDX68213 | Canola | nucleus, plastid | 15.99 | 21.49 |
| CDX93901 | Canola | nucleus | 10.87 | 21.25 |
| CDY63645 | Canola | nucleus | 20.9 | 21.21 |
| CDY13433 | Canola | nucleus | 20.9 | 21.03 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.7 | 20.91 |
| CDX77848 | Canola | nucleus | 9.38 | 20.75 |
| CDY53710 | Canola | nucleus | 10.66 | 20.66 |
| CDY67192 | Canola | nucleus | 9.38 | 20.66 |
| CDX96741 | Canola | nucleus | 15.78 | 20.33 |
| CDX83878 | Canola | nucleus | 15.35 | 20.17 |
| Os04t0603200-01 | Rice | nucleus | 14.07 | 20.06 |
| CDY32973 | Canola | nucleus | 16.84 | 19.27 |
| CDY43590 | Canola | nucleus | 17.06 | 19.0 |
| CDY27083 | Canola | nucleus | 8.53 | 18.26 |
| CDX91624 | Canola | nucleus | 8.53 | 18.18 |
| CDY00512 | Canola | nucleus | 10.02 | 17.22 |
| CDY31919 | Canola | nucleus | 10.02 | 17.22 |
| CDY37230 | Canola | nucleus | 21.11 | 16.81 |
| CDX75805 | Canola | cytosol | 15.78 | 16.7 |
| CDY62314 | Canola | nucleus | 20.9 | 16.55 |
| CDY24110 | Canola | nucleus | 15.99 | 16.3 |
| CDY26006 | Canola | nucleus | 15.99 | 16.23 |
| CDX97629 | Canola | nucleus | 15.14 | 16.1 |
| CDX82450 | Canola | nucleus | 15.35 | 16.07 |
| CDY24595 | Canola | nucleus | 10.66 | 15.87 |
| CDY68521 | Canola | nucleus | 14.93 | 15.87 |
| CDY25871 | Canola | nucleus | 15.78 | 15.48 |
| CDX79718 | Canola | nucleus | 17.48 | 15.44 |
| CDY46757 | Canola | nucleus | 17.48 | 15.38 |
| CDY55435 | Canola | nucleus | 17.27 | 15.34 |
| CDY25357 | Canola | nucleus | 10.45 | 15.31 |
| CDX91625 | Canola | cytosol | 7.46 | 15.28 |
| CDY55839 | Canola | nucleus | 15.78 | 15.13 |
| CDY68424 | Canola | nucleus | 17.27 | 15.08 |
| CDY27082 | Canola | cytosol | 7.46 | 14.71 |
| CDY17114 | Canola | nucleus | 16.63 | 14.69 |
| CDY22376 | Canola | nucleus | 19.19 | 14.63 |
| CDY33429 | Canola | nucleus | 10.23 | 14.55 |
| CDY42218 | Canola | nucleus | 10.23 | 14.37 |
| CDX71531 | Canola | nucleus | 19.19 | 14.13 |
| CDY17061 | Canola | nucleus | 18.12 | 14.03 |
| CDY43220 | Canola | nucleus | 17.7 | 13.63 |
| CDY69560 | Canola | nucleus | 7.89 | 7.27 |
| CDY36635 | Canola | nucleus | 7.89 | 6.21 |
| CDY47948 | Canola | nucleus | 6.61 | 6.16 |
Protein Annotations
| EnsemblPlants:CDY68658 | EnsemblPlantsGene:GSBRNA2T00076553001 | Gene3D:3.30.40.10 | GO:A0A078JMC1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 |
| PFscan:PS50089 | ProteinID:CDY68658 | ProteinID:CDY68658.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EB03C0 | UniProt:A0A078JMC1 | MapMan:35.1 | : | : | : |
Description
BnaCnng59990DBnaCnng59990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMC1]
Coordinates
chrLK037742:-:1271..3402
Molecular Weight (calculated)
51210.9 Da
IEP (calculated)
10.145
GRAVY (calculated)
-0.815
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLKGKRTA APVMPPRRAS GLVLHENTKK KDDKTVPTCS RVSCSSRISS NKGLSIDHKP KSTLRSPSNG KETVGSSSSR TTSGLTNTSK VTTRRQLSSL
101: LDTDSSESSS SSVHERRGKT KESSITRQVV TEAGSSSRGS STSVNRNGLR DLRSSVLPSS PNPTRKINTF RKKPSDGESS SSSRGNNNNK PEVKNNQSSL
201: PHGIITMSES RRNRNSPSVR DNNSVVSSSS TRRSSTGRTT GRASGAVANL QAPPQPGTRA GLINPSRSNA EVSRSPLHSY SRPISSNNGR LRSLMMMPGG
301: SPSEARLGFR RYDVNGVAEV LLALERMEQD EELTYEQLAV LETNLFLNGF HDQHRDMRLD IDNMSYEELL ALEEKMGTVS TALSEEALLK SLKLSTFNHP
401: TEKSGGVCLK KDDDVKCSIC QEEYVDGDEV GTLPCQHMYH VSCAQQWLRM KNWCPICKTS AESQPQPFS
101: LDTDSSESSS SSVHERRGKT KESSITRQVV TEAGSSSRGS STSVNRNGLR DLRSSVLPSS PNPTRKINTF RKKPSDGESS SSSRGNNNNK PEVKNNQSSL
201: PHGIITMSES RRNRNSPSVR DNNSVVSSSS TRRSSTGRTT GRASGAVANL QAPPQPGTRA GLINPSRSNA EVSRSPLHSY SRPISSNNGR LRSLMMMPGG
301: SPSEARLGFR RYDVNGVAEV LLALERMEQD EELTYEQLAV LETNLFLNGF HDQHRDMRLD IDNMSYEELL ALEEKMGTVS TALSEEALLK SLKLSTFNHP
401: TEKSGGVCLK KDDDVKCSIC QEEYVDGDEV GTLPCQHMYH VSCAQQWLRM KNWCPICKTS AESQPQPFS
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.