Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016574.1-P | Field mustard | nucleus | 93.56 | 93.3 |
| CDX96741 | Canola | nucleus | 94.68 | 92.86 |
| AT1G17970.1 | Thale cress | nucleus | 75.63 | 73.37 |
| CDY60141 | Canola | plastid | 54.62 | 54.62 |
| CDX73013 | Canola | plastid | 54.06 | 54.37 |
| CDY11092 | Canola | cytosol, plastid | 52.38 | 53.74 |
| CDX68213 | Canola | nucleus, plastid | 52.38 | 53.58 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 43.14 | 41.51 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 22.69 | 40.5 |
| KRH41763 | Soybean | nucleus | 42.3 | 40.05 |
| KRH48568 | Soybean | nucleus | 39.22 | 39.55 |
| KRH39137 | Soybean | nucleus | 40.34 | 39.02 |
| Solyc03g118840.2.1 | Tomato | nucleus | 40.62 | 37.47 |
| PGSC0003DMT400014732 | Potato | nucleus | 40.06 | 36.86 |
| PGSC0003DMT400078539 | Potato | plastid | 24.93 | 35.74 |
| KRH60461 | Soybean | nucleus | 42.3 | 35.03 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 33.33 | 34.69 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 32.77 | 33.91 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 33.33 | 33.9 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 31.37 | 33.53 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 28.57 | 33.44 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 20.45 | 33.18 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 31.09 | 32.65 |
| Zm00001d011636_P001 | Maize | nucleus | 30.53 | 32.25 |
| OQU87370 | Sorghum | nucleus | 31.37 | 32.09 |
| Zm00001d043784_P002 | Maize | nucleus | 30.81 | 31.79 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 32.49 | 30.53 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 29.13 | 30.06 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 29.13 | 29.89 |
| HORVU3Hr1G064370.1 | Barley | plastid | 32.21 | 29.87 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 29.13 | 29.8 |
| AT4G00070.1 | Thale cress | nucleus | 14.85 | 29.61 |
| Os05t0550000-00 | Rice | nucleus | 29.69 | 29.12 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 29.69 | 28.19 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 28.29 | 28.06 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 29.97 | 27.86 |
| HORVU1Hr1G082970.1 | Barley | plastid | 26.61 | 25.2 |
| AT1G36950.1 | Thale cress | cytosol | 13.45 | 21.24 |
| CDX97032 | Canola | plastid | 19.89 | 21.19 |
| CDY71882 | Canola | plastid | 19.89 | 20.29 |
| CDY40109 | Canola | nucleus | 10.36 | 19.89 |
| CDY13429 | Canola | cytosol | 14.01 | 19.38 |
| CDX85750 | Canola | nucleus | 20.45 | 18.91 |
| CDY27083 | Canola | nucleus | 10.92 | 17.81 |
| CDX91624 | Canola | nucleus | 10.92 | 17.73 |
| CDX77848 | Canola | nucleus | 10.36 | 17.45 |
| CDY67192 | Canola | nucleus | 10.08 | 16.9 |
| CDX95473 | Canola | nucleus | 21.57 | 16.59 |
| CDX91625 | Canola | cytosol | 10.64 | 16.59 |
| CDY53710 | Canola | nucleus | 11.2 | 16.53 |
| CDY32973 | Canola | nucleus | 18.21 | 15.85 |
| CDX93901 | Canola | nucleus | 10.64 | 15.83 |
| CDX70363 | Canola | nucleus | 21.29 | 15.64 |
| CDX78393 | Canola | nucleus | 21.57 | 15.59 |
| CDY43590 | Canola | nucleus | 18.21 | 15.44 |
| CDX88140 | Canola | nucleus | 20.73 | 15.35 |
| CDY68658 | Canola | nucleus | 20.17 | 15.35 |
| CDX97044 | Canola | nucleus | 21.85 | 15.29 |
| CDY68521 | Canola | nucleus | 18.21 | 14.74 |
| CDY27082 | Canola | cytosol | 9.8 | 14.71 |
| CDX69813 | Canola | mitochondrion | 21.29 | 14.26 |
| CDX97629 | Canola | nucleus | 17.37 | 14.06 |
| CDY31919 | Canola | nucleus | 10.64 | 13.92 |
| CDY00512 | Canola | nucleus | 10.64 | 13.92 |
| CDX75805 | Canola | cytosol | 16.25 | 13.09 |
| CDY24110 | Canola | nucleus | 16.81 | 13.04 |
| CDY17114 | Canola | nucleus | 19.33 | 12.99 |
| CDY26006 | Canola | nucleus | 16.81 | 12.99 |
| CDX82450 | Canola | nucleus | 15.97 | 12.72 |
| CDY62314 | Canola | nucleus | 20.45 | 12.33 |
| CDY37230 | Canola | nucleus | 20.17 | 12.22 |
| CDX79718 | Canola | nucleus | 17.93 | 12.05 |
| CDY17061 | Canola | nucleus | 20.45 | 12.05 |
| CDY43220 | Canola | nucleus | 20.45 | 11.99 |
| CDY25871 | Canola | nucleus | 15.97 | 11.92 |
| CDY46757 | Canola | nucleus | 17.65 | 11.82 |
| CDY24595 | Canola | nucleus | 10.36 | 11.75 |
| CDY55435 | Canola | nucleus | 17.37 | 11.74 |
| CDY68424 | Canola | nucleus | 17.65 | 11.73 |
| CDY63645 | Canola | nucleus | 15.13 | 11.69 |
| CDX71531 | Canola | nucleus | 20.73 | 11.62 |
| CDY25357 | Canola | nucleus | 10.36 | 11.56 |
| CDY55839 | Canola | nucleus | 15.69 | 11.45 |
| CDY22376 | Canola | nucleus | 19.61 | 11.38 |
| CDY33429 | Canola | nucleus | 10.36 | 11.21 |
| CDY13433 | Canola | nucleus | 14.57 | 11.16 |
| CDY42218 | Canola | nucleus | 10.36 | 11.08 |
| CDY47948 | Canola | nucleus | 5.32 | 3.78 |
| CDY69560 | Canola | nucleus | 5.32 | 3.73 |
| CDY36635 | Canola | nucleus | 5.32 | 3.19 |
Protein Annotations
| EnsemblPlants:CDX83878 | EnsemblPlantsGene:GSBRNA2T00139649001 | Gene3D:3.30.40.10 | GO:A0A078D952 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX83878 | ProteinID:CDX83878.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDD065 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g17670D
Coordinates
chrLK031834:-:941209..943299
Molecular Weight (calculated)
39977.4 Da
IEP (calculated)
9.683
GRAVY (calculated)
-0.733
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTIGEHI RLRRARHQTI RHSAADDDPP LTHVVPPISQ PTRFCNSAMS SFLLLPTSSN EPTKKKQLGF PQAASFRGMN CTAAAAHEVS VPSAIRSSAD
101: WDNKKKKKKK RNTKKKKGSY EDGSVRFLSE SRDVDGSGGC VAVPDVWCGP GLGFSTDAVS VNPPRKNLPS SRRKIDVDKN SPNQTEGSSV LTRRFTNQEP
201: HSHALMSSDS HVEPTLFSSR YHGHLRRPYP DDLTEMMMLR NGFLMGRTTD SLDHFHSLRL DVDNMSYEQL LELGDRIGYV NTGLKESEIR RCLRKINPSV
301: SNTLADRKCS ICQDEYEREC QVGKLDCGHS FHVQCVKQWL SRKNACPVCK KTAYAKP
101: WDNKKKKKKK RNTKKKKGSY EDGSVRFLSE SRDVDGSGGC VAVPDVWCGP GLGFSTDAVS VNPPRKNLPS SRRKIDVDKN SPNQTEGSSV LTRRFTNQEP
201: HSHALMSSDS HVEPTLFSSR YHGHLRRPYP DDLTEMMMLR NGFLMGRTTD SLDHFHSLRL DVDNMSYEQL LELGDRIGYV NTGLKESEIR RCLRKINPSV
301: SNTLADRKCS ICQDEYEREC QVGKLDCGHS FHVQCVKQWL SRKNACPVCK KTAYAKP
001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
Arabidopsis Description
At1g17970/F2H15_16 [Source:UniProtKB/TrEMBL;Acc:Q944L9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.