CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038909_P001	Maize	cytosol, mitochondrion	87.23	85.42
TraesCS1A01G373200.1	Wheat	nucleus	59.04	63.61
TraesCS1B01G393400.2	Wheat	nucleus	57.71	62.36
Os05t0550000-00	Rice	nucleus	59.84	61.81
TraesCS1D01G380000.2	Wheat	nucleus	56.65	61.56
OQU87370	Sorghum	nucleus	54.79	59.03
HORVU1Hr1G082970.1	Barley	plastid	53.46	53.32
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	45.21	50.9
GSMUA_Achr9P21480_001	Banana	plastid	44.15	48.82
GSMUA_Achr3P29390_001	Banana	golgi, plastid	45.48	45.0
GSMUA_Achr1P23200_001	Banana	nucleus	36.44	38.06
VIT_17s0000g03210.t01	Wine grape	nucleus	35.64	36.12
PGSC0003DMT400078539	Potato	plastid	22.87	34.54
VIT_01s0011g04080.t01	Wine grape	nucleus	30.32	32.48
KRH48568	Soybean	nucleus	30.32	32.2
Solyc03g118840.2.1	Tomato	nucleus	32.98	32.04
Solyc12g040390.1.1	Tomato	nucleus, plastid	25.8	31.8
PGSC0003DMT400014732	Potato	nucleus	32.71	31.7
KRH39137	Soybean	nucleus	30.32	30.89
Bra003830.1-P	Field mustard	nucleus, plastid	27.66	30.68
KRH41763	Soybean	nucleus	30.59	30.5
CDX73013	Canola	plastid	28.46	30.14
Bra015967.1-P	Field mustard	nucleus	28.46	29.97
CDY60141	Canola	plastid	28.46	29.97
CDX68213	Canola	nucleus, plastid	27.66	29.8
CDX83878	Canola	nucleus	28.19	29.69
Bra016574.1-P	Field mustard	nucleus	27.93	29.33
CDX96741	Canola	nucleus	27.66	28.57
OQU80744	Sorghum	mitochondrion	10.9	28.47
CDY11092	Canola	cytosol, plastid	25.8	27.87
AT1G73760.1	Thale cress	nucleus, plastid	26.86	27.52
Solyc05g008840.1.1	Tomato	nucleus, plastid	15.43	26.36
KRH60461	Soybean	nucleus	29.79	25.99
AT1G17970.1	Thale cress	nucleus	24.73	25.27
EER99218	Sorghum	nucleus	10.9	23.43
AT4G00070.1	Thale cress	nucleus	10.9	22.91
KXG40075	Sorghum	cytosol	12.77	19.28
EES12797	Sorghum	nucleus	19.15	19.25
EES11283	Sorghum	nucleus	12.23	18.62
OQU80147	Sorghum	nucleus	17.55	18.44
AT1G36950.1	Thale cress	cytosol	10.64	17.7
KXG19166	Sorghum	nucleus	11.97	16.54
EER97094	Sorghum	nucleus	13.56	15.74
EES15239	Sorghum	nucleus	13.03	15.61
KXG22536	Sorghum	nucleus	20.48	15.16
EES03404	Sorghum	nucleus	20.48	14.78
EES04530	Sorghum	nucleus	19.15	13.9
KXG20741	Sorghum	nucleus	20.74	13.22
EES19093	Sorghum	nucleus	17.82	12.45
EES00281	Sorghum	nucleus	16.49	12.04
EES11547	Sorghum	nucleus	20.74	11.82
EES10483	Sorghum	nucleus	21.54	11.64

Protein Annotations

EnsemblPlants:EES18624	EnsemblPlantsGene:SORBI_3009G221600	EntrezGene:8074552	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF63	PFAM:PF13639	PFscan:PS50089
ProteinID:EES18624	ProteinID:EES18624.1	RefSeq:XP_002440194.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001A88D51	UniProt:C5YV09	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:56472162..56474856

Molecular Weight (calculated)

40747.3 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.594

Length

376 amino acids

Sequence
(BLAST)

001: MARDGGGGVG SPVAVRRRVA LRALLASGGQ AETEAARAPG MGLLRGLRCT SAAASQAIAP ETPRPPADWR GLGCAAASQA HAPEAARPAA EWRGPLGCAS
101: AAAAQANAPV GAPAPRRSEE WRGRRRRNGR ERRKARGGGA GVSGGTGAGV GVGGGDVWCT PGIPFAAEAS SVDCVVAPHQ TVATRRRAEA DRPRRERPGA
201: PPARRVTMRE HMSSSPLSSP PHHDMPFVDA DRAPSGRIRH ISGRRHARAE EEMMFRTRIL LGRMGIYDQY QDWRLDVDNM TYEELLDLED RIGYVSTGLR
301: EDEIIQSLRM VKYSAFNPKH FSTEMDRRCS ICQEEFEANE ETGKLSCGHT YHVHCIKQWL SRKNACPVCK TTVSKT

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.