Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G00070.1 | Thale cress | nucleus | 41.59 | 52.51 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 17.7 | 20.0 |
| PGSC0003DMT400078539 | Potato | plastid | 15.04 | 13.65 |
| CDX83878 | Canola | nucleus | 21.24 | 13.45 |
| Bra016574.1-P | Field mustard | nucleus | 21.24 | 13.41 |
| CDX96741 | Canola | nucleus | 21.24 | 13.19 |
| AT5G52155.1 | Thale cress | nucleus | 10.62 | 13.19 |
| AT1G17970.1 | Thale cress | nucleus | 20.8 | 12.77 |
| AT3G47180.1 | Thale cress | cytosol | 11.5 | 12.38 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 16.37 | 12.13 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 18.14 | 11.95 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 18.14 | 11.88 |
| Zm00001d043784_P002 | Maize | nucleus | 18.14 | 11.85 |
| Zm00001d011636_P001 | Maize | nucleus | 17.7 | 11.83 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 19.03 | 11.72 |
| OQU87370 | Sorghum | nucleus | 17.7 | 11.46 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 17.26 | 11.11 |
| AT3G63530.2 | Thale cress | cytosol | 11.95 | 10.89 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 17.7 | 10.78 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 15.93 | 10.78 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 16.37 | 10.69 |
| HORVU3Hr1G064370.1 | Barley | plastid | 18.14 | 10.65 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 17.7 | 10.64 |
| Os05t0550000-00 | Rice | nucleus | 16.81 | 10.44 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 17.7 | 10.42 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 15.93 | 10.34 |
| Solyc03g118840.2.1 | Tomato | nucleus | 17.7 | 10.34 |
| PGSC0003DMT400014732 | Potato | nucleus | 17.7 | 10.31 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 15.49 | 10.29 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 15.49 | 10.03 |
| KRH48568 | Soybean | nucleus | 15.49 | 9.89 |
| KRH41763 | Soybean | nucleus | 16.37 | 9.81 |
| KRH39137 | Soybean | nucleus | 15.93 | 9.76 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 16.37 | 9.74 |
| HORVU1Hr1G082970.1 | Barley | plastid | 15.93 | 9.55 |
| AT5G52140.1 | Thale cress | nucleus | 11.06 | 8.93 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 14.16 | 8.89 |
| KRH60461 | Soybean | nucleus | 16.37 | 8.58 |
| AT3G19910.1 | Thale cress | nucleus | 12.83 | 8.53 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 6.64 | 7.5 |
| AT4G31450.2 | Thale cress | nucleus | 15.49 | 7.04 |
| AT1G53190.1 | Thale cress | nucleus | 14.16 | 6.48 |
| AT5G10650.2 | Thale cress | nucleus | 15.04 | 6.48 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 6.19 | 6.36 |
| AT5G24870.2 | Thale cress | nucleus | 14.6 | 6.35 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 16.37 | 6.18 |
| AT3G15070.1 | Thale cress | nucleus | 13.27 | 6.17 |
| AT5G42940.1 | Thale cress | nucleus | 18.14 | 5.93 |
| AT1G45180.3 | Thale cress | nucleus | 16.81 | 5.89 |
| AT4G34040.1 | Thale cress | nucleus | 17.26 | 5.86 |
| AT2G15530.4 | Thale cress | nucleus | 17.7 | 5.13 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:840604 | ProteinID:AEE31881.1 | ArrayExpress:AT1G36950 | EnsemblPlantsGene:AT1G36950 |
| RefSeq:AT1G36950 | TAIR:AT1G36950 | RefSeq:AT1G36950-TAIR-G | EnsemblPlants:AT1G36950.1 | TAIR:AT1G36950.1 | Unigene:At.51981 |
| UniProt:F4I3A0 | InterPro:GYF-like_dom_sf | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR035445 | RefSeq:NP_174888.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | SMART:SM00184 | SUPFAM:SSF55277 |
| SUPFAM:SSF57850 | UniParc:UPI0000162FDD | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I3A0]
Coordinates
chr1:-:14009673..14010822
Molecular Weight (calculated)
26636.3 Da
IEP (calculated)
5.850
GRAVY (calculated)
-0.960
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTDPYQELR MDTDPYQELR MDIDPYQELR MDTDHMTYEQ LLQLCNSMGY ENSSVKASNI DRCFRNTKPS EFQSLADKIC CICQDRFQRR AGVGKLNCGH
101: NFHINSVKPW ILTKKQCPVC QKTAHDDEHQ TQSYQVETIV LSDDDEEDMN SRDHQQYDPE QLLLFYEIPT GRTHRPFSLT SMRKWWDQGE DVFLKMDNIK
201: GYCCKKVVKK GSFANPSRHI NPSRDN
101: NFHINSVKPW ILTKKQCPVC QKTAHDDEHQ TQSYQVETIV LSDDDEEDMN SRDHQQYDPE QLLLFYEIPT GRTHRPFSLT SMRKWWDQGE DVFLKMDNIK
201: GYCCKKVVKK GSFANPSRHI NPSRDN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.