Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43220 | Canola | nucleus | 63.41 | 67.16 |
| CDY17061 | Canola | nucleus | 62.95 | 67.0 |
| KRH05664 | Soybean | nucleus | 12.4 | 66.12 |
| Bra014043.1-P | Field mustard | nucleus | 58.76 | 65.8 |
| CDY17114 | Canola | nucleus | 53.8 | 65.35 |
| AT5G42940.1 | Thale cress | nucleus | 57.36 | 53.55 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 41.09 | 36.1 |
| Solyc04g078680.2.1 | Tomato | nucleus | 37.21 | 33.24 |
| KRH52013 | Soybean | nucleus | 35.97 | 32.77 |
| PGSC0003DMT400039849 | Potato | nucleus | 35.19 | 32.76 |
| Solyc12g088740.1.1 | Tomato | nucleus | 35.19 | 32.76 |
| KRH61306 | Soybean | nucleus | 31.47 | 31.04 |
| PGSC0003DMT400020528 | Potato | nucleus | 32.87 | 30.77 |
| KRH61311 | Soybean | nucleus | 34.73 | 30.52 |
| AT4G34040.1 | Thale cress | nucleus | 28.06 | 27.18 |
| AT3G47180.1 | Thale cress | cytosol | 7.75 | 23.81 |
| AT4G00070.1 | Thale cress | nucleus | 6.51 | 23.46 |
| AT2G15530.4 | Thale cress | nucleus | 27.13 | 22.44 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 12.25 | 21.53 |
| AT3G63530.2 | Thale cress | cytosol | 8.06 | 20.97 |
| AT1G17970.1 | Thale cress | nucleus | 11.63 | 20.38 |
| AT5G52140.1 | Thale cress | nucleus | 8.53 | 19.64 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 18.14 | 19.53 |
| AT1G53190.1 | Thale cress | nucleus | 14.73 | 19.23 |
| AT5G24870.2 | Thale cress | nucleus | 14.11 | 17.5 |
| AT4G31450.2 | Thale cress | nucleus | 13.33 | 17.3 |
| AT3G15070.1 | Thale cress | nucleus | 12.87 | 17.08 |
| AT1G36950.1 | Thale cress | cytosol | 5.89 | 16.81 |
| AT5G10650.2 | Thale cress | nucleus | 13.64 | 16.76 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 5.12 | 16.5 |
| AT5G52155.1 | Thale cress | nucleus | 4.5 | 15.93 |
| AT3G19910.1 | Thale cress | nucleus | 8.06 | 15.29 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:841086 | ProteinID:AAF69164.1 | ProteinID:AEE32091.1 | ProteinID:ANM59160.1 |
| ProteinID:ANM59161.1 | ProteinID:ANM59162.1 | ArrayExpress:AT1G45180 | EnsemblPlantsGene:AT1G45180 | RefSeq:AT1G45180 | TAIR:AT1G45180 |
| RefSeq:AT1G45180-TAIR-G | EnsemblPlants:AT1G45180.3 | Unigene:At.38723 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001321544.1 |
| RefSeq:NP_001321545.1 | RefSeq:NP_001321546.1 | RefSeq:NP_175132.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF464 | UniProt:Q9MAJ1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000009D200 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
Coordinates
chr1:+:17098491..17101906
Molecular Weight (calculated)
71229.7 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.734
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.