Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G373200.1 | Wheat | nucleus | 93.06 | 92.26 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 91.62 | 91.09 |
| HORVU1Hr1G082970.1 | Barley | plastid | 76.01 | 69.76 |
| Os05t0550000-00 | Rice | nucleus | 63.29 | 60.16 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 34.68 | 60.0 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 61.56 | 56.65 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 61.27 | 55.21 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 48.55 | 49.41 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 46.82 | 48.5 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 47.98 | 43.68 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 36.99 | 35.56 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 37.86 | 35.31 |
| PGSC0003DMT400078539 | Potato | plastid | 24.57 | 34.14 |
| Solyc03g118840.2.1 | Tomato | nucleus | 35.84 | 32.04 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 32.37 | 31.91 |
| PGSC0003DMT400014732 | Potato | nucleus | 35.55 | 31.7 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 27.46 | 31.15 |
| KRH48568 | Soybean | nucleus | 31.5 | 30.79 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 30.06 | 30.68 |
| KRH41763 | Soybean | nucleus | 33.24 | 30.5 |
| Bra016574.1-P | Field mustard | nucleus | 31.21 | 30.17 |
| KRH39137 | Soybean | nucleus | 32.08 | 30.08 |
| CDX73013 | Canola | plastid | 30.64 | 29.86 |
| CDY60141 | Canola | plastid | 30.64 | 29.69 |
| Bra015967.1-P | Field mustard | nucleus | 30.64 | 29.69 |
| CDX96741 | Canola | nucleus | 31.21 | 29.67 |
| CDX68213 | Canola | nucleus, plastid | 29.48 | 29.23 |
| CDX83878 | Canola | nucleus | 30.06 | 29.13 |
| CDY11092 | Canola | cytosol, plastid | 28.9 | 28.74 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 29.48 | 27.79 |
| AT1G17970.1 | Thale cress | nucleus | 28.9 | 27.17 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 17.05 | 26.82 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 8.96 | 26.27 |
| KRH60461 | Soybean | nucleus | 32.08 | 25.75 |
| AT4G00070.1 | Thale cress | nucleus | 12.72 | 24.58 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 11.56 | 23.39 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 19.94 | 18.55 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 12.43 | 17.13 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 12.43 | 16.73 |
| AT1G36950.1 | Thale cress | cytosol | 10.69 | 16.37 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 15.03 | 15.29 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 12.72 | 14.67 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 11.27 | 14.44 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 20.81 | 13.43 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 20.23 | 13.36 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 22.83 | 13.1 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 21.68 | 13.09 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 19.65 | 12.88 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 18.21 | 12.16 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 21.1 | 10.91 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 21.1 | 10.41 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G380000.2 | EnsemblPlantsGene:TraesCS1D01G380000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF63 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:+:455782623..455785126
Molecular Weight (calculated)
39131.1 Da
IEP (calculated)
8.575
GRAVY (calculated)
-0.821
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDGASAER RRVALRVLLA RAEGSSSSSP PPRGPEEEAR RGKQQWLALR LRDLGCASAA ASRAHAPVPA SASVRPAPAA EEEEEEEEED WRETRRQRRR
101: RRRARERRAA GGGGLAGAGV APAGDVWCTC TPGIPFAAEA SSVDCVVARH HTAAPGRRGD GERRHRERTA EQRARRVTMR EHISSSFMDS PPRFHMPFHD
201: ADLLHSARHR HAHPYDRTDE EIMMFRTRLL LGRMGMYDQY QDWRLDVDNM NYEELLALED RIGYVSTGLR DDEIVRGLRV GKHLPFDRKH FSTETERSCS
301: ICQEEFEASE EVGRLSCGHG YHVHCIKQWL SRKNACPLCK VAVSKP
101: RRRARERRAA GGGGLAGAGV APAGDVWCTC TPGIPFAAEA SSVDCVVARH HTAAPGRRGD GERRHRERTA EQRARRVTMR EHISSSFMDS PPRFHMPFHD
201: ADLLHSARHR HAHPYDRTDE EIMMFRTRLL LGRMGMYDQY QDWRLDVDNM NYEELLALED RIGYVSTGLR DDEIVRGLRV GKHLPFDRKH FSTETERSCS
301: ICQEEFEASE EVGRLSCGHG YHVHCIKQWL SRKNACPLCK VAVSKP
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.