Factsheet for TraesCS3D01G105300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G120600.2	Wheat	cytosol	95.37	95.37
TraesCS3A01G103000.1	Wheat	nucleus	93.44	93.26
HORVU3Hr1G018800.2	Barley	cytosol, plastid	88.8	78.1
EES00281	Sorghum	nucleus	55.6	55.92
Zm00001d008649_P003	Maize	cytosol	54.05	53.13
Os01t0159300-01	Rice	nucleus	51.35	53.09
Zm00001d039769_P002	Maize	cytosol	53.47	50.27
TraesCS1D01G111500.1	Wheat	nucleus	43.44	41.98
GSMUA_AchrUn_...	Banana	nucleus	8.69	40.18
VIT_16s0022g00290.t01	Wine grape	nucleus	5.02	34.21
TraesCS5D01G286700.1	Wheat	nucleus	5.98	26.27
TraesCS3D01G260700.1	Wheat	nucleus	10.04	26.0
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	7.14	21.64
VIT_08s0040g02160.t01	Wine grape	nucleus	20.85	19.78
KRG95955	Soybean	nucleus	20.46	19.31
TraesCS2D01G432800.1	Wheat	nucleus	13.71	19.09
PGSC0003DMT400004449	Potato	nucleus	19.88	19.0
Solyc09g007530.2.1	Tomato	nucleus	19.88	19.0
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.73	18.95
KRH32434	Soybean	nucleus	19.69	18.92
KRH19845	Soybean	nucleus	19.88	18.73
KRH67668	Soybean	nucleus	19.88	18.69
TraesCS1D01G380000.2	Wheat	nucleus	12.16	18.21
CDY55435	Canola	nucleus	18.53	18.18
CDY68424	Canola	nucleus	18.73	18.06
TraesCS3D01G244600.1	Wheat	nucleus	18.34	17.99
CDX79718	Canola	nucleus	18.34	17.89
Bra017205.1-P	Field mustard	nucleus	18.15	17.5
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	10.04	17.33
Bra023101.1-P	Field mustard	nucleus	17.76	17.26
VIT_13s0019g04100.t01	Wine grape	extracellular	18.73	17.17
CDY46757	Canola	nucleus	17.57	17.07
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	11.2	17.06
TraesCS2D01G397800.1	Wheat	cytosol	8.11	16.34
GSMUA_Achr5P08460_001	Banana	nucleus	17.95	16.2
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	8.11	15.56
TraesCS7D01G049800.1	Wheat	nucleus	7.53	15.54
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	17.76	15.36
TraesCS2D01G516000.1	Wheat	nucleus	19.11	14.8
TraesCS7D01G420400.1	Wheat	nucleus	15.83	14.31
TraesCS1D01G405800.9	Wheat	cytosol	14.29	14.12
TraesCS2D01G022900.1	Wheat	nucleus	18.15	13.41
TraesCS6D01G111500.2	Wheat	nucleus	15.25	13.1
Bra028576.1-P	Field mustard	cytosol	6.18	11.31
CDY47948	Canola	nucleus	9.07	9.34
Bra036336.1-P	Field mustard	nucleus	9.07	9.34

Protein Annotations

EnsemblPlants:TraesCS3D01G105300.1	EnsemblPlantsGene:TraesCS3D01G105300	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3D:-:57505239..57507466

Molecular Weight (calculated)

55531.6 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.422

Length

518 amino acids

Sequence
(BLAST)

001: MDHTQPRDGH GNEPVPLGQM LFEHSGSDAP LRLGPPGFGS MASRSNDVPS SSHATQFPGH RVLNVGTSHV SFVPYRTAIS SSHVPYDAQP KPALSSHVDN
101: RMVAMKRKSL LPSVEGMDAV DYYVGSSSNS HFSDFVQPNP SALTEPLHPQ MPLNIGPSNW IDQRLVNQEG SQRNVRARHD SANISLEPRP ASTYTPSNNH
201: QLPFHSTTSA FASTSAGRNQ APFPVPTRTL PSGGTGITDR IYHHPMHSSS SSVAAAPTVH GSSDSAMFAN AGFPAPRAVH GSSAAAAPTV HGSSDSAVFA
301: NGGFTAPRAV HGGAVPSYGH PSYTVSSGSR AISHDAVIPS YPAATSTSMR IINLPSPISN AASSRHARVS MVHANSGRNR FVDRSSFHLI AETQRVMMEQ
401: LAFYQQSRQA AADPHRDLRL NIDEMSYEEL LALEESIGTV NTGLADEKIS GCVKEVVCCS SDEAQDDEDD GRCLVCLEEY KDNELLGILK CRHDFHTDCI
501: KKWLQVKNAC PVCKSAAA

Best Arabidopsis Sequence Match ( AT5G24870.1 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.