CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67668	Soybean	nucleus	91.26	90.93
KRH32434	Soybean	nucleus	73.04	74.4
KRH19845	Soybean	nucleus	73.95	73.82
VIT_08s0040g02160.t01	Wine grape	nucleus	63.39	63.74
GSMUA_AchrUn_...	Banana	nucleus	11.11	54.46
KRH05664	Soybean	nucleus	11.66	52.89
Solyc09g007530.2.1	Tomato	nucleus	51.37	52.03
PGSC0003DMT400004449	Potato	nucleus	50.82	51.48
GSMUA_Achr5P08460_001	Banana	nucleus	33.15	31.71
KRH53246	Soybean	nucleus	9.29	27.87
KRH24699	Soybean	nucleus	12.2	27.02
KRH29702	Soybean	nucleus	11.84	26.21
KRH27487	Soybean	cytosol, nucleus, plastid	11.66	25.91
KRH64669	Soybean	nucleus	9.11	24.75
KRH20832	Soybean	nucleus	11.11	24.7
KRH30071	Soybean	cytosol	15.12	24.13
KRH17980	Soybean	nucleus	8.74	23.65
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	21.68	23.24
Os01t0159300-01	Rice	nucleus	21.13	23.15
KRH55165	Soybean	nucleus	13.11	23.15
KRH16389	Soybean	nucleus	8.56	22.93
KRH22017	Soybean	nucleus	21.86	22.73
KRH26195	Soybean	nucleus	18.94	22.71
KRH55161	Soybean	nucleus	18.94	22.71
KRH48568	Soybean	nucleus	14.57	22.6
KRH39137	Soybean	nucleus	14.94	22.22
EES00281	Sorghum	nucleus	20.77	22.14
KRH55090	Soybean	nucleus	14.75	21.77
TraesCS1D01G111500.1	Wheat	nucleus	20.95	21.46
Zm00001d008649_P003	Maize	cytosol	20.58	21.44
TraesCS1A01G107600.1	Wheat	nucleus	20.4	20.86
HORVU1Hr1G024190.2	Barley	nucleus	20.4	20.86
Os05t0163400-03	Rice	nucleus	20.22	20.83
TraesCS1B01G129600.1	Wheat	nucleus	20.22	20.79
Zm00001d039769_P002	Maize	cytosol	20.77	20.69
KRH41763	Soybean	nucleus	14.21	20.69
EES19093	Sorghum	nucleus	20.22	20.63
TraesCS3A01G103000.1	Wheat	nucleus	19.49	20.62
TraesCS3D01G105300.1	Wheat	cytosol	19.31	20.46
TraesCS3B01G120600.2	Wheat	cytosol	19.31	20.46
KRG90628	Soybean	nucleus	11.66	19.1
KRH60461	Soybean	nucleus	14.39	18.33
KRH04957	Soybean	nucleus	17.67	18.23
KRH61306	Soybean	nucleus	21.49	18.04
HORVU3Hr1G018800.2	Barley	cytosol, plastid	19.13	17.83
KRH16134	Soybean	nucleus	17.85	17.66
KRH52597	Soybean	nucleus	17.12	17.38
KRH36126	Soybean	cytosol, mitochondrion, nucleus	11.11	17.18
KRH52013	Soybean	nucleus	22.04	17.09
KRH50319	Soybean	nucleus	21.86	16.78
KRH61311	Soybean	nucleus	22.4	16.76
KRH70661	Soybean	mitochondrion, nucleus	22.22	16.74
KRH61936	Soybean	nucleus	14.39	14.18
KRH04592	Soybean	nucleus	8.38	13.77
KRH04591	Soybean	nucleus	8.38	13.65
Bra028576.1-P	Field mustard	cytosol	6.38	12.37
CDY47948	Canola	nucleus	10.75	11.73
Bra036336.1-P	Field mustard	nucleus	10.75	11.73
KRH05663	Soybean	cytosol	11.84	11.19

Protein Annotations

EntrezGene:100803627	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02012141	EnsemblPlantsGene:GLYMA_19G180000	UniProt:I1NA76
InterPro:IPR001841	InterPro:IPR013083	ProteinID:KRG95954.1	EnsemblPlants:KRG95955	ProteinID:KRG95955	ProteinID:KRG95955.1
ProteinID:KRG95956.1	ProteinID:KRG95957.1	ProteinID:KRG95958.1	ProteinID:KRG95959.1	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233F30B	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:43883106..43891820

Molecular Weight (calculated)

60823.7 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.723

Length

549 amino acids

Sequence
(BLAST)

001: MGHRHLHNTS SLFDGEPDQN WNHLHTDQQY VHLGRTNTSE NSSFIYPAEN MSIDSISFPS HWNSSSRSNG YASSSHNIVV PPHQSDASGT SNDHFVHSSS
101: AGPFFTVSEN YLHQPSSSNY DRQTFHVDAG FIDLTMGSGQ GHHKRKSPGI PSVYEGGSTS RYFNAGSSTD LPISSELWQE KPNIDSQYMP WDHFTMTPTF
201: RGTGLSIKGE GSLRNVRSRS TLDLDSNLSR THLSSNHSHN SYPTVPPVDH SSMADLSGQT SGTLTRDWSQ MNMSPANGRV LLSDTSSFGL ETSHFLVGSG
301: ATASNASVDV GGFHHEFGAS RNPTAPQSFH NTHTQTARGI RSNYSQRSTP TFRASSSLRL GHVTSDDGLP MVAESYSSRH PRPLSTIGWR NGDRNGRSRI
401: SSERYRSLTE ESGLHDRFSS EGFMVVERAS VYGSRNMLDQ HRDMRMDVDN MSYEELLALG ERIGYVNTGV SEDLLSKCLT ETIYCSSEQS EDEGNCVICL
501: EEYKNMDDVG TLQTCGHDYH VSCIKKWLSM KKLCPICKVS ALPEDTKDK

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.