Factsheet for TraesCS1D01G111500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G107600.1	Wheat	nucleus	97.39	97.21
TraesCS1B01G129600.1	Wheat	nucleus	96.64	97.0
HORVU1Hr1G024190.2	Barley	nucleus	94.4	94.23
Os05t0163400-03	Rice	nucleus	73.51	73.92
EES19093	Sorghum	nucleus	63.81	63.57
GSMUA_AchrUn_...	Banana	nucleus	9.7	46.43
TraesCS3D01G105300.1	Wheat	cytosol	41.98	43.44
VIT_16s0022g00290.t01	Wine grape	nucleus	5.78	40.79
TraesCS3D01G260700.1	Wheat	nucleus	10.63	28.5
TraesCS5D01G286700.1	Wheat	nucleus	5.41	24.58
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	7.84	24.56
KRH32434	Soybean	nucleus	22.39	22.26
KRH19845	Soybean	nucleus	22.2	21.64
KRG95955	Soybean	nucleus	21.46	20.95
TraesCS1D01G380000.2	Wheat	nucleus	13.43	20.81
TraesCS2D01G432800.1	Wheat	nucleus	14.37	20.7
KRH67668	Soybean	nucleus	21.27	20.69
VIT_08s0040g02160.t01	Wine grape	nucleus	20.71	20.33
PGSC0003DMT400004449	Potato	nucleus	20.52	20.3
Solyc09g007530.2.1	Tomato	nucleus	20.52	20.3
CDY55435	Canola	nucleus	19.96	20.27
Bra023101.1-P	Field mustard	nucleus	20.15	20.26
CDY68424	Canola	nucleus	19.96	19.93
CDY46757	Canola	nucleus	19.78	19.89
CDX79718	Canola	nucleus	19.59	19.77
Bra017205.1-P	Field mustard	nucleus	19.78	19.74
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.66	19.53
VIT_13s0019g04100.t01	Wine grape	extracellular	20.34	19.29
GSMUA_Achr5P08460_001	Banana	nucleus	20.15	18.82
TraesCS3D01G244600.1	Wheat	nucleus	18.1	18.37
TraesCS7D01G049800.1	Wheat	nucleus	8.4	17.93
TraesCS1D01G405800.9	Wheat	cytosol	17.35	17.75
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	19.59	17.53
TraesCS2D01G397800.1	Wheat	cytosol	8.21	17.12
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	8.4	16.67
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	8.96	16.0
TraesCS2D01G516000.1	Wheat	nucleus	19.4	15.55
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	9.51	15.0
TraesCS7D01G420400.1	Wheat	nucleus	15.86	14.83
TraesCS2D01G022900.1	Wheat	nucleus	18.1	13.84
TraesCS6D01G111500.2	Wheat	nucleus	15.11	13.43
Bra028576.1-P	Field mustard	cytosol	7.09	13.43
Bra036336.1-P	Field mustard	nucleus	8.4	8.95
CDY47948	Canola	nucleus	8.4	8.95

Protein Annotations

EnsemblPlants:TraesCS1D01G111500.1	EnsemblPlantsGene:TraesCS1D01G111500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1D:+:106949154..106959268

Molecular Weight (calculated)

58455.9 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.748

Length

536 amino acids

Sequence
(BLAST)

001: MAGHHYHNSQ MSRMDRTNQP RNEPPPFGQK LFVHPRGDAP NGAGPSGYGV TTVRSNELPS SSYTGQSYGQ QIGAPGTLHA SHAGYPPAGS SSSSYAPYNT
101: QHVPSLSYPR RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GISAGGYYPG SSSNNQISGY MPLNPVPTRE TCPPQISSNM GSSHWNDHQF LNHEGSQRNV
201: RGRHDHSSIH SEYNSSTACP SSSVHVPPYH PNANAPFGAP VQRERAPLSL PPRIVPPGTD GSTGIAFRER PFYPAPQSTN ISAPVPPLPG SSDGAPFARI
301: GYTPRPVHHN AGHNYPPPAF TTSSNSGAVR CEPANPRYQP AMPSYPPATA AASSSVQPLH AEAAASFRQP RHVSVGHGGS ARSRRMRDSY HCFHPLMIEE
401: NNLGRSAAER FMMLDQLVIH ESREALDPHW DMRLDIDDMS YEELLALEER IGNVNTGLAD EKISGCVMEL ACRNSARTQN DQDKERCIIC LEEYKHKDSL
501: GKLKCGHDFH AGCIKKWLEV KNACPVCKAD AANETT

Best Arabidopsis Sequence Match ( AT2G15530.1 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.