Factsheet for TraesCS3B01G120600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G105300.1	Wheat	cytosol	95.37	95.37
TraesCS3A01G103000.1	Wheat	nucleus	93.24	93.06
HORVU3Hr1G018800.2	Barley	cytosol, plastid	88.61	77.93
EES00281	Sorghum	nucleus	54.83	55.15
Zm00001d008649_P003	Maize	cytosol	53.67	52.75
Os01t0159300-01	Rice	nucleus	50.58	52.3
Zm00001d039769_P002	Maize	cytosol	52.51	49.36
TraesCS1B01G129600.1	Wheat	nucleus	44.02	42.7
GSMUA_AchrUn_...	Banana	nucleus	8.88	41.07
VIT_16s0022g00290.t01	Wine grape	nucleus	4.83	32.89
TraesCS5B01G279200.1	Wheat	cytosol	5.6	23.77
TraesCS5B01G313800.1	Wheat	cytosol, nucleus, plastid	7.34	22.22
TraesCS3B01G293600.1	Wheat	nucleus	13.9	20.99
VIT_08s0040g02160.t01	Wine grape	nucleus	21.04	19.96
TraesCS2B01G456100.1	Wheat	nucleus	14.09	19.57
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	19.11	19.34
KRG95955	Soybean	nucleus	20.46	19.31
KRH32434	Soybean	nucleus	19.88	19.11
PGSC0003DMT400004449	Potato	nucleus	19.88	19.0
TraesCS1B01G393400.2	Wheat	nucleus	12.74	18.97
KRH19845	Soybean	nucleus	20.08	18.91
Solyc09g007530.2.1	Tomato	nucleus	19.69	18.82
TraesCS3B01G272400.4	Wheat	nucleus	19.11	18.75
KRH67668	Soybean	nucleus	19.88	18.69
TraesCS2B01G418300.1	Wheat	cytosol	9.07	18.58
CDY55435	Canola	nucleus	18.53	18.18
CDX79718	Canola	nucleus	18.53	18.08
CDY68424	Canola	nucleus	18.73	18.06
Bra017205.1-P	Field mustard	nucleus	18.15	17.5
Bra023101.1-P	Field mustard	nucleus	17.95	17.45
CDY46757	Canola	nucleus	17.76	17.26
VIT_13s0019g04100.t01	Wine grape	extracellular	18.34	16.81
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	9.46	16.39
GSMUA_Achr5P08460_001	Banana	nucleus	18.15	16.38
TraesCS4B01G191300.1	Wheat	nucleus	8.11	16.03
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	17.76	15.36
TraesCS1B01G426200.9	Wheat	cytosol	15.64	14.78
TraesCS2B01G542200.2	Wheat	nucleus	18.92	14.63
TraesCS7B01G328500.1	Wheat	nucleus	16.02	14.36
TraesCS5B01G325800.1	Wheat	mitochondrion	10.04	13.76
TraesCS6B01G149700.2	Wheat	nucleus	14.67	13.48
TraesCS2B01G030700.1	Wheat	nucleus	17.95	13.27
Bra028576.1-P	Field mustard	cytosol	6.37	11.66
CDY47948	Canola	nucleus	8.49	8.75
Bra036336.1-P	Field mustard	nucleus	8.49	8.75

Protein Annotations

EnsemblPlants:TraesCS3B01G120600.2	EnsemblPlantsGene:TraesCS3B01G120600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:90470507..90472721

Molecular Weight (calculated)

55381.5 Da

IEP (calculated)

7.231

GRAVY (calculated)

-0.396

Length

518 amino acids

Sequence
(BLAST)

001: MDHTQPRDGH GNEPVPLGQM LFEHSGSDAP LRIGPPGFGS MASRSNDVPS SSHATQFPGH RVVNLGTSHV SFVPYCTARS SGHVPYDAQP KPALSSHVDN
101: RMVAMKRKNL LPSVEGMDAV DYYVGSSSNS HFSDFVQPNP SALTEPLHPR MPLNIGRSNW IDQHLVNQEV SQRNVRARHD SANISLEARP ASTYTPSSNH
201: QLPFHSTTSA FASTSAGRNQ APFSVPTRTL PSGGTGITGR IYHHPMHSSS SSVAAAPTVH GSSDSAMFAN AGFPAPRAVH GSSAAAAPTV HGSSDSAVFA
301: NGGFTAPRAV HGGAIPSYGH PSSTVSSGSR AISHDAVIPS YPAATSTSVR IINLPSPIST AAPSRHARVS MAHANSGRNR FVDRSSFHLI AETQRVMMEQ
401: LAFYQQSRQA AADPHRDLRL NIDEMSYEEL LALEESIGTV NTGLADEKIS ACVKEVVCCS SDEAQDDEDD GRCLVCLEEY KNNDLLGILK CRHDFHTDCI
501: KKWLQVKNAC PVCKSAAA

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.