Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G112900.1 | Wheat | nucleus | 94.27 | 98.8 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 91.22 | 88.52 |
| Os03t0173900-01 | Rice | nucleus | 83.59 | 87.6 |
| KXG40075 | Sorghum | cytosol | 77.48 | 81.53 |
| Zm00001d027868_P004 | Maize | cytosol | 76.72 | 74.44 |
| Zm00001d048301_P001 | Maize | cytosol | 64.5 | 70.12 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 91.6 | 68.18 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 57.25 | 59.29 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 48.47 | 50.4 |
| PGSC0003DMT400082375 | Potato | nucleus | 46.95 | 50.0 |
| Solyc11g062260.1.1 | Tomato | nucleus | 46.95 | 50.0 |
| KRH24699 | Soybean | nucleus | 46.18 | 48.79 |
| KRH29702 | Soybean | nucleus | 45.8 | 48.39 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 24.81 | 38.01 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 34.35 | 35.57 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 15.65 | 33.61 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 29.01 | 25.42 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 32.06 | 22.22 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 17.94 | 13.7 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 15.65 | 11.78 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 16.41 | 11.53 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 20.99 | 10.42 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 21.37 | 10.22 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 17.94 | 8.8 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 16.03 | 8.11 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 20.61 | 8.06 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 17.18 | 7.98 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 17.18 | 7.79 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 20.23 | 7.56 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G191300.1 | EnsemblPlantsGene:TraesCS4B01G191300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:413830497..413834059
Molecular Weight (calculated)
29653.7 Da
IEP (calculated)
6.084
GRAVY (calculated)
-0.629
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGSRQMELH YINTGYPYTI TESFMDFFEG LTYAQADFAL ADAFQDQANP YWTMMQTNSY KYGYSGAGNY YSYGHVYDMN DYMHRADSGR RIWDNPMPVN
101: STDSPNIVLQ GAEAPHASAS STTEERIQQP VHQNSSSPQV VWQDSIDPDN MTYEELLDLG EAVGTQSRGL SQESISALPV TKFKCGLFSR KKKRRERCVI
201: CQMEYRRGDL QMALPCKHVY HASCVTKWLT INKVCPVCFA EVPGEEPKRG DHKSSCAGTT YA
101: STDSPNIVLQ GAEAPHASAS STTEERIQQP VHQNSSSPQV VWQDSIDPDN MTYEELLDLG EAVGTQSRGL SQESISALPV TKFKCGLFSR KKKRRERCVI
201: CQMEYRRGDL QMALPCKHVY HASCVTKWLT INKVCPVCFA EVPGEEPKRG DHKSSCAGTT YA
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.