Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G022900.1 | Wheat | nucleus | 97.57 | 97.57 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 97.43 | 97.43 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 93.3 | 92.63 |
| Os04t0185500-01 | Rice | nucleus | 67.33 | 66.57 |
| EES10483 | Sorghum | nucleus | 63.62 | 64.08 |
| Zm00001d004300_P003 | Maize | nucleus | 62.05 | 62.68 |
| Zm00001d025027_P002 | Maize | nucleus | 61.34 | 61.78 |
| PGSC0003DMT400079217 | Potato | cytosol | 8.56 | 60.61 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 12.13 | 57.82 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 20.11 | 30.92 |
| Bra015221.1-P | Field mustard | nucleus | 23.25 | 27.3 |
| CDY62314 | Canola | nucleus | 21.83 | 25.84 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 24.54 | 25.67 |
| CDY37230 | Canola | nucleus | 21.54 | 25.64 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 23.4 | 25.47 |
| Bra039842.1-P | Field mustard | nucleus | 21.68 | 25.46 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 4.42 | 25.41 |
| AT4G34040.1 | Thale cress | nucleus | 24.11 | 25.38 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 26.53 | 25.34 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 13.27 | 24.93 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 5.99 | 24.56 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 11.98 | 24.49 |
| KRH50319 | Soybean | nucleus | 22.97 | 22.52 |
| PGSC0003DMT400066252 | Potato | nucleus | 22.68 | 22.24 |
| KRH70661 | Soybean | mitochondrion, nucleus | 22.97 | 22.09 |
| AT2G15530.4 | Thale cress | nucleus | 23.82 | 21.41 |
| Solyc01g107930.2.1 | Tomato | nucleus | 21.68 | 21.17 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 10.41 | 20.98 |
| Solyc01g107940.2.1 | Tomato | nucleus | 21.11 | 20.93 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 16.41 | 20.39 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 21.11 | 20.39 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 7.56 | 20.23 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 6.99 | 19.37 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 14.27 | 18.94 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 14.98 | 18.17 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 13.69 | 17.98 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 13.27 | 17.95 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 6.85 | 16.05 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 8.56 | 15.87 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 12.27 | 15.69 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G030700.1 | EnsemblPlantsGene:TraesCS2B01G030700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF94 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2B:+:14045306..14051467
Molecular Weight (calculated)
76297.2 Da
IEP (calculated)
6.861
GRAVY (calculated)
-0.655
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHNRVTMLS SSETRHLGSS SNNQAIDQQN PAVDEHNLLP DALESDNYPH YVLNSHEAGM PSGSMIGQQN TSLSLWDSPG SSSTGFLGDH DSLLQAKREH
101: FAPALSIGGP LIIEGRRRES SSSLPSHNLN IDLNINQADQ FETGNVDMVQ SNGHSGMNTY PLNRGLSTTE NVLRREISPG AIRSSLHSAN LFDGAAGQET
201: GGSSSHTVNH FRSAIKRKNV AGSLGESSAN GSSRNHRQNN DMLLPSLSSH ESTANLNMTS VNYGFSYPPM EQLDQNTDTS EDDIFSDPYT LSGHLHENQR
301: FLRNTRMRIS ANEYEQSLTN LLPEESFRCS AHQPARQQSS FTPVQPRGVS SSASSQNRPH VPAVAQFSQS LQRHPSNGNF GSRVGSSADT INPTPASQDP
401: GSSLARSNLP EPFMLGPSLF TTDSTNLLSA PGSRSNQQNP GSSSTLRAAA NVGTQQVPGL NSSQPSSAAR GSADVPRRAS LAASVSHSRS PSIALQHRGH
501: SSSSHEIRNH QPGSSARASL QHYSRAVPPS IDRQNPGYLD LQSFMQSIAA SREGSRTVSE LRNVVEQIRQ GRSAARLEDF LVDRQLIRRA SLVDRHREMR
601: LDVDNMSYEE LLALGERIGH VSTGLSEEKI MSGLKQWKYL HIPLEEPATV VEPCCICQED YADGEDMGRV ECGHYFHTAC IKQWLVIKNT CPICKKAALG
701: T
101: FAPALSIGGP LIIEGRRRES SSSLPSHNLN IDLNINQADQ FETGNVDMVQ SNGHSGMNTY PLNRGLSTTE NVLRREISPG AIRSSLHSAN LFDGAAGQET
201: GGSSSHTVNH FRSAIKRKNV AGSLGESSAN GSSRNHRQNN DMLLPSLSSH ESTANLNMTS VNYGFSYPPM EQLDQNTDTS EDDIFSDPYT LSGHLHENQR
301: FLRNTRMRIS ANEYEQSLTN LLPEESFRCS AHQPARQQSS FTPVQPRGVS SSASSQNRPH VPAVAQFSQS LQRHPSNGNF GSRVGSSADT INPTPASQDP
401: GSSLARSNLP EPFMLGPSLF TTDSTNLLSA PGSRSNQQNP GSSSTLRAAA NVGTQQVPGL NSSQPSSAAR GSADVPRRAS LAASVSHSRS PSIALQHRGH
501: SSSSHEIRNH QPGSSARASL QHYSRAVPPS IDRQNPGYLD LQSFMQSIAA SREGSRTVSE LRNVVEQIRQ GRSAARLEDF LVDRQLIRRA SLVDRHREMR
601: LDVDNMSYEE LLALGERIGH VSTGLSEEKI MSGLKQWKYL HIPLEEPATV VEPCCICQED YADGEDMGRV ECGHYFHTAC IKQWLVIKNT CPICKKAALG
701: T
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.