Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G260700.1 | Wheat | nucleus | 55.98 | 96.0 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 95.92 | 95.36 |
| HORVU3Hr1G064370.1 | Barley | plastid | 93.88 | 83.64 |
| OQU87370 | Sorghum | nucleus | 82.8 | 81.38 |
| Zm00001d011636_P001 | Maize | nucleus | 78.43 | 79.59 |
| Zm00001d043784_P002 | Maize | nucleus | 79.59 | 78.9 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 58.6 | 60.18 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 57.73 | 58.24 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 54.52 | 53.74 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 57.14 | 51.58 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 46.36 | 44.17 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 46.94 | 43.4 |
| KRH48568 | Soybean | nucleus | 40.52 | 39.27 |
| Solyc03g118840.2.1 | Tomato | nucleus | 42.86 | 37.98 |
| KRH39137 | Soybean | nucleus | 40.82 | 37.94 |
| KRH41763 | Soybean | nucleus | 41.69 | 37.93 |
| PGSC0003DMT400014732 | Potato | nucleus | 42.57 | 37.63 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 37.9 | 37.04 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 32.07 | 36.07 |
| PGSC0003DMT400078539 | Potato | plastid | 25.95 | 35.74 |
| CDX73013 | Canola | plastid | 35.28 | 34.08 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 33.53 | 33.92 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 36.15 | 33.79 |
| Bra015967.1-P | Field mustard | nucleus | 34.99 | 33.61 |
| CDY60141 | Canola | plastid | 34.99 | 33.61 |
| CDX83878 | Canola | nucleus | 34.69 | 33.33 |
| CDX96741 | Canola | nucleus | 34.99 | 32.97 |
| KRH60461 | Soybean | nucleus | 41.4 | 32.95 |
| CDX68213 | Canola | nucleus, plastid | 33.24 | 32.66 |
| CDY11092 | Canola | cytosol, plastid | 32.94 | 32.47 |
| Bra016574.1-P | Field mustard | nucleus | 33.82 | 32.4 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 18.95 | 29.55 |
| AT1G17970.1 | Thale cress | nucleus | 31.49 | 29.35 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 10.2 | 28.69 |
| AT4G00070.1 | Thale cress | nucleus | 13.41 | 25.7 |
| TraesCS5B01G313800.1 | Wheat | cytosol, nucleus, plastid | 12.54 | 25.15 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 23.03 | 21.18 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 13.99 | 18.97 |
| AT1G36950.1 | Thale cress | cytosol | 11.95 | 18.14 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 13.7 | 17.94 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 14.58 | 16.72 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 24.49 | 14.89 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 22.74 | 14.61 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 22.45 | 14.58 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 15.45 | 14.02 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 20.99 | 13.9 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 21.87 | 13.69 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 23.03 | 13.67 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 23.91 | 12.24 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 24.49 | 11.98 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G293600.1 | EnsemblPlantsGene:TraesCS3B01G293600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF63 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:472854503..472857467
Molecular Weight (calculated)
37186.4 Da
IEP (calculated)
9.650
GRAVY (calculated)
-0.564
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDRRGGSP TVERRRGIRR LLLPRGEVSS SSSPSVPLPP PAAAEVGRRK SFASAALRGL GCTSAAASQA YAPGAGSAAA AAVRSSADWH GRRKKGKDRR
101: KERGGGGGGG LVGGGIGGDV WCAPGIPFAA EASSVDCVVA RHQMLGRGRG GDAERPHRER PCLSRRASMQ EQISSSFMES PPPPPPAHLD GPFFGADLLP
201: SARLRRMRGY RPSPGGLEEE IMMFQTRVLL GGMNMYDRYQ DWRLDVDNMT YEELLELGER IGHVNTGLRE DEIVRNLRKV KPDSSFRLPT EAEKKCSICQ
301: EEFEANDELG RLGCGHSYHV YCIKQWLSQK NVCPVCKTAV TKT
101: KERGGGGGGG LVGGGIGGDV WCAPGIPFAA EASSVDCVVA RHQMLGRGRG GDAERPHRER PCLSRRASMQ EQISSSFMES PPPPPPAHLD GPFFGADLLP
201: SARLRRMRGY RPSPGGLEEE IMMFQTRVLL GGMNMYDRYQ DWRLDVDNMT YEELLELGER IGHVNTGLRE DEIVRNLRKV KPDSSFRLPT EAEKKCSICQ
301: EEFEANDELG RLGCGHSYHV YCIKQWLSQK NVCPVCKTAV TKT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.