Factsheet for Bra003830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68213	Canola	nucleus, plastid	97.94	95.13
CDY11092	Canola	cytosol, plastid	91.45	89.08
Bra015967.1-P	Field mustard	nucleus	77.58	73.67
AT1G73760.1	Thale cress	nucleus, plastid	68.73	63.49
Bra016574.1-P	Field mustard	nucleus	53.98	51.12
VIT_17s0000g03210.t01	Wine grape	nucleus	44.84	40.97
KRH41763	Soybean	nucleus	43.95	39.52
KRH48568	Soybean	nucleus	39.53	37.85
TraesCS3D01G260700.1	Wheat	nucleus	22.12	37.5
Solyc03g118840.2.1	Tomato	nucleus	42.18	36.95
KRH39137	Soybean	nucleus	40.12	36.86
PGSC0003DMT400014732	Potato	nucleus	42.18	36.86
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	34.81	35.33
PGSC0003DMT400078539	Potato	plastid	25.66	34.94
KRH60461	Soybean	nucleus	43.95	34.57
GSMUA_Achr9P21480_001	Banana	plastid	33.92	33.82
TraesCS3B01G293600.1	Wheat	nucleus	33.92	33.53
TraesCS3A01G260500.1	Wheat	nucleus	33.92	33.33
Solyc12g040390.1.1	Tomato	nucleus, plastid	28.91	32.13
OQU87370	Sorghum	nucleus	33.04	32.09
Zm00001d043784_P002	Maize	nucleus	32.15	31.5
VIT_01s0011g04080.t01	Wine grape	nucleus	32.45	31.34
GSMUA_Achr3P29390_001	Banana	golgi, plastid	34.51	30.79
Zm00001d011636_P001	Maize	nucleus	30.68	30.77
TraesCS1B01G393400.2	Wheat	nucleus	31.27	30.46
Solyc05g008840.1.1	Tomato	nucleus, plastid	19.76	30.45
TraesCS1D01G380000.2	Wheat	nucleus	30.68	30.06
GSMUA_Achr1P23200_001	Banana	nucleus	31.56	29.72
TraesCS1A01G373200.1	Wheat	nucleus	30.38	29.51
HORVU3Hr1G064370.1	Barley	plastid	33.04	29.09
Os05t0550000-00	Rice	nucleus	30.68	28.57
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.68	27.66
Zm00001d038909_P001	Maize	cytosol, mitochondrion	30.97	27.34
HORVU1Hr1G082970.1	Barley	plastid	28.02	25.2
Bra024009.1-P	Field mustard	nucleus	12.98	25.14
Bra019499.1-P	Field mustard	nucleus	10.62	21.95
Bra006070.1-P	Field mustard	nucleus	23.6	16.16
Bra022580.1-P	Field mustard	cytosol	8.55	16.11
Bra027467.1-P	Field mustard	nucleus	19.47	16.1
Bra040450.1-P	Field mustard	nucleus	11.21	15.7
Bra009015.1-P	Field mustard	plastid	23.01	14.63
Bra027282.1-P	Field mustard	nucleus	18.88	14.38
Bra001582.1-P	Field mustard	nucleus	17.4	13.5
Bra009800.1-P	Field mustard	nucleus	15.93	13.17
Bra023101.1-P	Field mustard	nucleus	20.06	12.76
Bra015221.1-P	Field mustard	nucleus	22.42	12.73
Bra022466.1-P	Field mustard	nucleus	12.09	12.65
Bra039659.1-P	Field mustard	nucleus	17.11	12.61
Bra039842.1-P	Field mustard	nucleus	22.12	12.56
Bra024007.1-P	Field mustard	nucleus	17.11	12.42
Bra017205.1-P	Field mustard	nucleus	19.17	12.1
Bra033652.1-P	Field mustard	nucleus	21.83	12.03
Bra038240.1-P	Field mustard	nucleus	11.5	11.71
Bra038109.1-P	Field mustard	nucleus	16.52	11.67
Bra022579.1-P	Field mustard	cytosol	4.42	11.36
Bra028576.1-P	Field mustard	cytosol	9.44	11.31
Bra028293.1-P	Field mustard	nucleus	7.37	10.46
Bra014043.1-P	Field mustard	nucleus	17.7	10.42
Bra036336.1-P	Field mustard	nucleus	5.9	3.98

Protein Annotations

EnsemblPlants:Bra003830.1	EnsemblPlants:Bra003830.1-P	EnsemblPlantsGene:Bra003830	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF96	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254171D	UniProt:M4CHZ7	MapMan:35.1

Description

AT1G73760 (E=3e-115) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:+:15252032..15253394

Molecular Weight (calculated)

37832.9 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.727

Length

339 amino acids

Sequence
(BLAST)

001: MPSSGDPSTT IRHQPMNLPP FPTADEPLIP KPSRICKSAM STFFLLPSSS NEPNNRRKGK KQTTSSFRSL GCTSSASQQV SVPAVIRSSA NWDPSNAKSK
101: KKNKGCSYSG GGSVKILSEA ERSGCGPVPD VWCGPGVGFS TDAVVSGTVE AEPPRRNIPA RRKIDGEGSS VPPRRSHNQE TSLYFDSDLT SRDEQMQTLF
201: SDRYHRHLRQ PYPNGLDEMM MIHNGFVMGE MLGSHDHFRD LRLNVDGMSY EQLLELGDRI GYVDTGLNEK QIKTCLWRVK PSHKATPLED RKCSICQEEY
301: EGKDEVGKLR CGHRYHIHCA KQWLLRKNSC PVCKTMPFV

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.