Factsheet for Bra038240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42218	Canola	nucleus	99.4	99.1
CDY33429	Canola	nucleus	95.5	96.36
Bra022466.1-P	Field mustard	nucleus	83.78	86.11
AT3G19910.1	Thale cress	nucleus	81.38	79.71
VIT_10s0042g00580.t01	Wine grape	nucleus	48.65	52.6
GSMUA_Achr4P05140_001	Banana	nucleus	45.35	51.01
TraesCS5D01G286700.1	Wheat	nucleus	18.02	50.85
GSMUA_Achr3P26700_001	Banana	nucleus	43.24	49.32
KRG90628	Soybean	nucleus	48.95	48.66
OQU80744	Sorghum	mitochondrion	21.02	48.61
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	40.84	47.22
TraesCS5B01G279200.1	Wheat	cytosol	17.12	46.72
EES15239	Sorghum	nucleus	42.64	45.22
Os08t0548300-01	Rice	nucleus	41.14	44.92
EER97094	Sorghum	nucleus	43.54	44.75
Os09t0535100-01	Rice	nucleus	43.54	44.62
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	45.05	44.12
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	37.84	43.9
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	39.04	43.48
KRH36126	Soybean	cytosol, mitochondrion, nucleus	45.95	43.1
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	38.74	43.0
HORVU5Hr1G082790.2	Barley	nucleus	43.84	42.2
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	37.84	42.14
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	40.24	41.61
Zm00001d006226_P001	Maize	peroxisome	39.64	41.51
TraesCS5B01G325800.1	Wheat	mitochondrion	45.35	39.95
GSMUA_Achr9P24150_001	Banana	nucleus	36.04	39.87
TraesCS5A01G325400.2	Wheat	nucleus	43.84	39.46
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	36.04	39.09
GSMUA_Achr4P04290_001	Banana	nucleus	24.02	36.04
Bra040450.1-P	Field mustard	nucleus	21.02	28.93
Bra019499.1-P	Field mustard	nucleus	13.51	27.44
Bra024009.1-P	Field mustard	nucleus	10.81	20.57
Bra022580.1-P	Field mustard	cytosol	10.81	20.0
Bra022579.1-P	Field mustard	cytosol	7.81	19.7
Bra028293.1-P	Field mustard	nucleus	12.31	17.15
Bra015967.1-P	Field mustard	nucleus	12.61	11.76
Bra003830.1-P	Field mustard	nucleus, plastid	11.71	11.5
Bra027467.1-P	Field mustard	nucleus	13.81	11.22
Bra023101.1-P	Field mustard	nucleus	17.42	10.88
Bra001582.1-P	Field mustard	nucleus	14.11	10.76
Bra016574.1-P	Field mustard	nucleus	11.41	10.61
Bra024007.1-P	Field mustard	nucleus	14.41	10.28
Bra006070.1-P	Field mustard	nucleus	15.02	10.1
Bra027282.1-P	Field mustard	nucleus	13.21	9.89
Bra038109.1-P	Field mustard	nucleus	14.11	9.79
Bra039659.1-P	Field mustard	nucleus	13.51	9.78
Bra009015.1-P	Field mustard	plastid	15.32	9.57
Bra017205.1-P	Field mustard	nucleus	15.32	9.5
Bra033652.1-P	Field mustard	nucleus	16.52	8.94
Bra015221.1-P	Field mustard	nucleus	15.92	8.88
Bra039842.1-P	Field mustard	nucleus	15.02	8.38
Bra014043.1-P	Field mustard	nucleus	13.81	7.99
Bra009800.1-P	Field mustard	nucleus	9.61	7.8
Bra028576.1-P	Field mustard	cytosol	5.11	6.01
Bra036336.1-P	Field mustard	nucleus	8.41	5.57

Protein Annotations

EnsemblPlants:Bra038240.1	EnsemblPlants:Bra038240.1-P	EnsemblPlantsGene:Bra038240	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF166	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002544AC7	UniProt:M4FAX5	MapMan:35.1

Description

AT3G19910 (E=3e-115) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:21380103..21382754

Molecular Weight (calculated)

36181.0 Da

IEP (calculated)

3.658

GRAVY (calculated)

-0.855

Length

333 amino acids

Sequence
(BLAST)

001: MAMEKDNSDH ASNVAVTAEQ ATKINDADAR SPENRQTGVV PESGSGSSEK GEEGAETAAA AVDDDESGSN SVGELLPPRS SSSARVPFTN LSQIDSDLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYEEDEFDD PEDEDDEYGT DDDPQEDAPD VNANGDDQED GGRNAETEEA GYSDDEAFAR AIQEAEAREM
201: ADRLSALTGL ANRVEVLEDD DHTSEDAWDE MDPDELSYEE LLALGDIVGT ESRGLSADTI ASLPSKRYKD GENQNGTNES CVICRLDYED DDDLILLPCK
301: HSYHSECINN WLKINKICPV CSAEVSTSSA GQS

Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)

001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS

Arabidopsis Description

BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.