Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15239 | Sorghum | nucleus | 91.99 | 84.08 |
| OQU80744 | Sorghum | mitochondrion | 39.37 | 78.47 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 65.85 | 65.62 |
| Os08t0548300-01 | Rice | nucleus | 66.55 | 62.62 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 63.41 | 60.67 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 63.07 | 60.54 |
| TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 61.67 | 59.2 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 54.36 | 48.45 |
| Zm00001d006226_P001 | Maize | peroxisome | 53.31 | 48.11 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 49.13 | 47.64 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 47.04 | 46.23 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 43.55 | 40.58 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 42.51 | 39.74 |
| CDY25357 | Canola | nucleus | 43.9 | 39.38 |
| Bra022466.1-P | Field mustard | nucleus | 43.21 | 38.27 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 40.07 | 38.21 |
| CDY33429 | Canola | nucleus | 43.9 | 38.18 |
| CDY24595 | Canola | nucleus | 41.81 | 38.1 |
| CDY42218 | Canola | nucleus | 44.25 | 38.02 |
| Bra038240.1-P | Field mustard | nucleus | 43.9 | 37.84 |
| AT3G19910.1 | Thale cress | nucleus | 44.6 | 37.65 |
| KRG90628 | Soybean | nucleus | 42.51 | 36.42 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 27.87 | 36.04 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 42.86 | 34.65 |
| Zm00001d048301_P001 | Maize | cytosol | 23.69 | 28.22 |
| Zm00001d021225_P002 | Maize | cytosol | 17.07 | 28.0 |
| Zm00001d027868_P004 | Maize | cytosol | 25.78 | 27.41 |
| Zm00001d026446_P001 | Maize | cytosol | 13.24 | 20.65 |
| Zm00001d015453_P001 | Maize | cytosol | 9.06 | 20.16 |
| Zm00001d013776_P001 | Maize | cytosol | 8.71 | 19.38 |
| Zm00001d019616_P001 | Maize | cytosol | 8.71 | 19.38 |
| Zm00001d002624_P003 | Maize | cytosol | 22.65 | 19.35 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 17.77 | 19.03 |
| Zm00001d011636_P001 | Maize | nucleus | 17.07 | 14.5 |
| Zm00001d043784_P002 | Maize | nucleus | 16.72 | 13.87 |
| Zm00001d024406_P002 | Maize | nucleus | 16.38 | 13.13 |
| Zm00001d026248_P001 | Maize | nucleus | 16.72 | 12.63 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.07 | 12.34 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 16.03 | 11.98 |
| Zm00001d015323_P002 | Maize | cytosol | 4.53 | 11.5 |
| Zm00001d015289_P001 | Maize | nucleus | 19.86 | 10.07 |
| Zm00001d009571_P002 | Maize | nucleus | 17.42 | 9.77 |
| Zm00001d008649_P003 | Maize | cytosol | 16.72 | 9.11 |
| Zm00001d039769_P002 | Maize | cytosol | 16.72 | 8.71 |
| Zm00001d014609_P002 | Maize | nucleus | 17.42 | 8.55 |
| Zm00001d011541_P004 | Maize | nucleus | 15.33 | 8.3 |
| Zm00001d026445_P001 | Maize | nucleus | 18.47 | 8.09 |
| Zm00001d002080_P002 | Maize | nucleus | 18.47 | 7.99 |
| Zm00001d025027_P002 | Maize | nucleus | 18.82 | 7.76 |
| Zm00001d004300_P003 | Maize | nucleus | 18.12 | 7.49 |
| Zm00001d039015_P002 | Maize | cytosol | 10.45 | 7.33 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 8.36 | 3.9 |
Protein Annotations
| EntrezGene:100193231 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:AQK58954.1 | UniProt:B4FEA5 | EMBL:BT035443 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF166 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00017B682E |
| EnsemblPlantsGene:Zm00001d053212 | EnsemblPlants:Zm00001d053212_P002 | EnsemblPlants:Zm00001d053212_T002 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
E3 ubiquitin ligase BIG BROTHER-related
Coordinates
chr4:+:220417152..220419734
Molecular Weight (calculated)
30778.3 Da
IEP (calculated)
3.525
GRAVY (calculated)
-0.728
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSSKRIGG GGDDMPSPDH DQNASPNVPP SAAGDGGASA TAAAAPAAGR RPFTSLSQEE ADLALARVLQ EQERAYMMLT GGEYAISDAE SYDYDEEDGD
101: GSDYEEEGEA LDEDEQVGDA EAEGAEGDLD LDPSQYEDDG EGDVSDRLMA LVGIGDWRAM EQDDAGDEED DEDAEVHTQG AWEDVDPDEY SYEELIALGE
201: VVGTESKGLA ADTIASLPWV TYQAQDKQDG NMEQCVICRV EFDEGESLVA LPCKHPYHSE CINQWLQLNK VCPMCSAEVP TSVNKQA
101: GSDYEEEGEA LDEDEQVGDA EAEGAEGDLD LDPSQYEDDG EGDVSDRLMA LVGIGDWRAM EQDDAGDEED DEDAEVHTQG AWEDVDPDEY SYEELIALGE
201: VVGTESKGLA ADTIASLPWV TYQAQDKQDG NMEQCVICRV EFDEGESLVA LPCKHPYHSE CINQWLQLNK VCPMCSAEVP TSVNKQA
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.