Factsheet for Zm00001d025027_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10483	Sorghum	nucleus	88.22	88.22
Zm00001d004300_P003	Maize	nucleus	86.49	86.74
GSMUA_Achr4P06090_001	Banana	cytosol	14.66	69.39
PGSC0003DMT400079217	Potato	cytosol	9.48	66.67
Os04t0185500-01	Rice	nucleus	62.64	61.5
TraesCS2B01G030700.1	Wheat	nucleus	61.78	61.34
TraesCS2D01G022900.1	Wheat	nucleus	61.49	61.06
TraesCS2A01G022100.1	Wheat	nucleus	61.21	60.77
HORVU2Hr1G003340.5	Barley	nucleus	61.21	60.34
Zm00001d026446_P001	Maize	cytosol	12.21	46.2
GSMUA_Achr4P12850_001	Banana	nucleus	21.55	32.89
Zm00001d015453_P001	Maize	cytosol	6.03	32.56
Zm00001d013776_P001	Maize	cytosol	5.89	31.78
Zm00001d019616_P001	Maize	cytosol	5.89	31.78
Zm00001d026445_P001	Maize	nucleus	27.01	28.7
Zm00001d002080_P002	Maize	nucleus	26.72	28.05
Bra015221.1-P	Field mustard	nucleus	23.71	27.64
GSMUA_Achr9P22530_001	Banana	nucleus	25.29	27.33
VIT_03s0063g00160.t01	Wine grape	nucleus	28.3	26.84
Zm00001d021225_P002	Maize	cytosol	6.61	26.29
CDY37230	Canola	nucleus	22.13	26.15
Bra039842.1-P	Field mustard	nucleus	22.27	25.96
CDY62314	Canola	nucleus	21.98	25.84
AT4G34040.1	Thale cress	nucleus	24.71	25.83
Zm00001d011636_P001	Maize	nucleus	12.36	25.44
PGSC0003DMT400066252	Potato	nucleus	25.86	25.17
Zm00001d043784_P002	Maize	nucleus	12.36	24.86
Solyc01g107940.2.1	Tomato	nucleus	24.43	24.05
Solyc01g107930.2.1	Tomato	nucleus	24.71	23.96
KRH50319	Soybean	nucleus	23.56	22.94
KRH70661	Soybean	mitochondrion, nucleus	23.99	22.91
Zm00001d026248_P001	Maize	nucleus	12.5	22.89
Zm00001d048301_P001	Maize	cytosol	7.9	22.82
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	23.13	22.18
Zm00001d038909_P001	Maize	cytosol, mitochondrion	12.07	21.88
AT2G15530.4	Thale cress	nucleus	24.14	21.54
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	12.07	21.16
Zm00001d024406_P002	Maize	nucleus	10.78	20.95
Zm00001d011541_P004	Maize	nucleus	15.52	20.38
Zm00001d009571_P002	Maize	nucleus	14.94	20.31
Zm00001d027868_P004	Maize	cytosol	7.76	20.0
Zm00001d039769_P002	Maize	cytosol	15.52	19.6
Zm00001d008649_P003	Maize	cytosol	14.8	19.54
Zm00001d045517_P001	Maize	mitochondrion, nucleus	7.47	19.4
Zm00001d014609_P002	Maize	nucleus	16.09	19.15
Zm00001d015289_P001	Maize	nucleus	15.37	18.9
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	7.76	18.82
Zm00001d015323_P002	Maize	cytosol	3.02	18.58
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	7.9	17.08
Zm00001d006226_P001	Maize	peroxisome	7.61	16.67
Zm00001d002624_P003	Maize	cytosol	7.9	16.37
Zm00001d039015_P002	Maize	cytosol	8.48	14.43
Zm00001d037536_P006	Maize	mitochondrion, plastid	10.06	11.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6J480	ProteinID:AQK42780.1	ProteinID:AQK42783.1	ProteinID:AQK42788.1
ProteinID:AQK42790.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF94	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0008441FB5	EnsemblPlantsGene:Zm00001d025027	EnsemblPlants:Zm00001d025027_P002	EnsemblPlants:Zm00001d025027_T002	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase MBR2

Coordinates

chr10:+:100381692..100393417

Molecular Weight (calculated)

76071.3 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.555

Length

696 amino acids

Sequence
(BLAST)

001: MQHNRITVLS SSETFQLGSS SSNPVMDHQN LLPNNSNVDE QILLPNALEH EDCPHYLLNG HDVGVPNGSL IGQQNTSLSL WEPAGSSSMS CLVDHDNFFQ
101: AKREHLASSL SIGGPLNIDR RRHEGTSSLP LHNLNIDLNI NQADQFGSDD VDLVHGNGQS SANTVTAHRG SFITDHIMHH GVSSDATGSS SWNAECFNGA
201: ASQHSRHPAF KRKYLDGCQC HAESSANGSS HNCHQNDSTL LPLRTTCESL TMPTTTNFSV PHPPVEQLNQ STNISANSTL IDHYSSYSGP HANEFMRNTR
301: MRINPSDYDQ SLPSLLPEGS FRCPAYQHTQ QQSSFRPVQP RQVSSSGSHS RPHLPVVTQF SQNLHRPSAN ISFGSRIGSS SSSGSTVLIP ASQDPSTSLI
401: GSDFPEPLLL GSLFTADSTN FLSASGNRSN QQNSGSSSSS MLRPAVNVAA QQVPGFNVSQ PSTTLRGSAD VSRRSLTAAG VSHFRSSSMA LQHRGTSSTP
501: HEIRSHQPGS SSRAHQQSLR PGHSSIDRQS SGYLDLQSFM QSIASREGGR PMSQIRNVFD QIRQGRNARL EDLLLIDRSL IMRRANLIDR HRDMRLDVDN
601: MSYEELLALG ERIGYVNTGL SEEKILSNLK QRKYVLISLE DPPTGVEPCC ICQEDYAEGE DLGRLDCGHD FHTACIKQWL VIKNVCPICK KTALDA

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.