Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06090_001 | Banana | cytosol | 19.57 | 85.71 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 47.67 | 67.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.39 | 48.21 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 31.99 | 29.56 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 32.61 | 29.17 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 2.64 | 28.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.78 | 28.0 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 31.68 | 27.79 |
| Zm00001d025027_P002 | Maize | nucleus | 27.33 | 25.29 |
| EES10483 | Sorghum | nucleus | 27.02 | 25.0 |
| Zm00001d004300_P003 | Maize | nucleus | 26.71 | 24.78 |
| KRH50319 | Soybean | nucleus | 27.33 | 24.62 |
| Os04t0185500-01 | Rice | nucleus | 27.02 | 24.54 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 12.89 | 24.41 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 12.58 | 24.25 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 25.47 | 23.4 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 25.47 | 23.4 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 25.47 | 23.4 |
| KRH70661 | Soybean | mitochondrion, nucleus | 26.24 | 23.18 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 25.31 | 23.09 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 12.73 | 21.58 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 16.93 | 21.29 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 12.11 | 21.02 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 8.23 | 20.95 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 11.65 | 20.83 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 15.84 | 20.82 |
| GSMUA_Achr10P... | Banana | nucleus | 15.22 | 19.37 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 8.85 | 19.26 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 7.3 | 18.95 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 8.07 | 17.81 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 8.07 | 17.28 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 13.04 | 16.34 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 7.76 | 16.29 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 14.29 | 16.03 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 5.43 | 15.77 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 4.81 | 15.74 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 14.29 | 15.62 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 15.53 | 15.38 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 10.25 | 14.25 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 6.52 | 12.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P22530_001 | EnsemblPlants:GSMUA_Achr9T22530_001 | EnsemblPlantsGene:GSMUA_Achr9G22530_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF94 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294FFF4 | UniProt:M0U2L2 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G22530_001]
Coordinates
chr9:+:27630807..27636718
Molecular Weight (calculated)
71287.6 Da
IEP (calculated)
6.548
GRAVY (calculated)
-0.660
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWNNLLFNS VENHDLPSNP LSPSGTNISR GNVVCQGSAS LNIWDPVGTS SSMPSLDQGS NDEIKQECGW TFSLSNRDSG PRISDGRSEE PFSQFLNFRE
101: LPHNLDYGSA HVGMSSQVLE SGQHQEPYNP GLMQYQPVSF SGSSSGTFES SSRAIDFLSN NDRNRQRVAL DDQSFSHKRK NIERFHGESS ASGSSSNFNE
201: GVKHAEEEIN AGIGTSTRVA ASEHQYFGSA AVNDESFQRN IRTRVNHADL TNATIPNPLH QENYITQYNL WPAQQPSLTI PSNQPSNSRL VGSHMGPRRQ
301: PLVQTIPGLS PDLYPFPQSG TSTREANSSS SSPAISVDGA SRELNSMSVS SNLVEQLFIP PPNTRQLVQN QTNRGLTIGN TTLSGNGVPT SQVGTNSGVY
401: QSPGANWVPH HQHRRLSETI LGSFLSSVSE SRGWNMSLPP RNGHSSTSQE VGRHQPGAGP RNHQQLYMRF PNMLHRQNDG ALSNPLSMRT LAAARERRSR
501: TSEIRNVFDL IRRGDTLVLE DFLSFEQSGY VGGTNFHDRY RDMRLDVDNM SYEELLVLGE RIGYVNTGLS EEKILNCLRQ RKYVSIASEP SGEVEPCCIC
601: REEYMEGAEL GRLDCGHDFH TACIKQWLMI KNLCPICKTT ALST
101: LPHNLDYGSA HVGMSSQVLE SGQHQEPYNP GLMQYQPVSF SGSSSGTFES SSRAIDFLSN NDRNRQRVAL DDQSFSHKRK NIERFHGESS ASGSSSNFNE
201: GVKHAEEEIN AGIGTSTRVA ASEHQYFGSA AVNDESFQRN IRTRVNHADL TNATIPNPLH QENYITQYNL WPAQQPSLTI PSNQPSNSRL VGSHMGPRRQ
301: PLVQTIPGLS PDLYPFPQSG TSTREANSSS SSPAISVDGA SRELNSMSVS SNLVEQLFIP PPNTRQLVQN QTNRGLTIGN TTLSGNGVPT SQVGTNSGVY
401: QSPGANWVPH HQHRRLSETI LGSFLSSVSE SRGWNMSLPP RNGHSSTSQE VGRHQPGAGP RNHQQLYMRF PNMLHRQNDG ALSNPLSMRT LAAARERRSR
501: TSEIRNVFDL IRRGDTLVLE DFLSFEQSGY VGGTNFHDRY RDMRLDVDNM SYEELLVLGE RIGYVNTGLS EEKILNCLRQ RKYVSIASEP SGEVEPCCIC
601: REEYMEGAEL GRLDCGHDFH TACIKQWLMI KNLCPICKTT ALST
001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
Arabidopsis Description
MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.