Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11290_001 | Banana | nucleus | 71.11 | 73.46 |
| PGSC0003DMT400079217 | Potato | cytosol | 9.44 | 68.69 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 12.08 | 59.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.94 | 44.64 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 21.25 | 33.55 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 29.17 | 32.61 |
| Solyc01g107940.2.1 | Tomato | nucleus | 31.25 | 31.82 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 2.64 | 31.67 |
| Bra015221.1-P | Field mustard | nucleus | 25.83 | 31.16 |
| CDY62314 | Canola | nucleus | 25.28 | 30.74 |
| CDY37230 | Canola | nucleus | 25.0 | 30.56 |
| AT4G34040.1 | Thale cress | nucleus | 28.19 | 30.48 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 30.69 | 30.44 |
| PGSC0003DMT400066252 | Potato | nucleus | 30.14 | 30.35 |
| Bra039842.1-P | Field mustard | nucleus | 25.14 | 30.32 |
| Solyc01g107930.2.1 | Tomato | nucleus | 30.14 | 30.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.31 | 29.78 |
| AT2G15530.4 | Thale cress | nucleus | 27.78 | 25.64 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 11.39 | 24.55 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 16.25 | 23.88 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 11.25 | 23.82 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 11.67 | 22.64 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 15.42 | 21.68 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 11.39 | 21.58 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 10.56 | 21.11 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 7.36 | 20.95 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 7.08 | 20.56 |
| GSMUA_Achr10P... | Banana | nucleus | 14.17 | 20.16 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 13.33 | 18.68 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 7.64 | 18.58 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 14.44 | 18.12 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 7.22 | 17.81 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 15.97 | 17.69 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 5.42 | 17.57 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 14.17 | 17.32 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 4.72 | 17.26 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 6.81 | 15.96 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 6.11 | 14.62 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 6.53 | 13.86 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 8.89 | 13.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P15680_001 | EnsemblPlants:GSMUA_Achr8T15680_001 | EnsemblPlantsGene:GSMUA_Achr8G15680_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296E5AD | UniProt:M0TQS1 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G15680_001]
Coordinates
chr8:-:13296125..13304713
Molecular Weight (calculated)
78730.2 Da
IEP (calculated)
6.359
GRAVY (calculated)
-0.629
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGQRSFVEP FHDSFEFDHG SNTTSSGVNQ QFMWNNMLFN PVEIQSMTDR IVSSANSNRP CLNMANQDGA RLSIWNTGGS SSSEHAQNQG GHEENKLDTG
101: WTPSATITSQ GGPRIEENRF EASHVLSLEN VNISHGTTQI DGIQSLPRNN SHSNNIHQNS EHAALQDGIG NEISEPRQSH HPYMLRFLDP ETVPSSIGSS
201: NPSGSVSESV GFLREDDERP ENSLDGRRSS CKRKNSDGFP GQSSASGNAS SSHQSETSLL HSRSYNPMTG LNISSTSSYP SAAHFTEEYP AGFANVIRGT
301: ASNCYPSANA AGNAESSRRN HRIRTNPAQA QDISLRNSVD TVGQLEAWLQ NRPPSHSISL NHSLGPTPLL TTASSQNQPG PPIVPGVPPI AYSFPWNGTS
401: NSRIGISSVS FSTEDRMIAA REGNNLRNMP GTSILDVVPV TDIRDMIQDQ ANWSMGSRNI SMVPSSQAVT NSGLHPTLGS TWVSHQNPPA QYPQPLPENI
501: HASLLSSGSF ESGGQRANFP MQHSGHSFSS QEVAQQIRAS LHGPQTPPHI RSTHLIRRRY DGLLGASLTM RSLTAAGEER SRMLSEIRHA LESLRRGDGL
601: RFETLILAGS DMHDRHRDMR LDVDNMSYEE LLALEERIGD VCTGLSEETI LKHLKQQKHS LGTLGVSMEH EPCCICQEEY VEGEDLGTLA CGHDFHTVCI
701: KQWLMHKNLC PICKNTALVT
101: WTPSATITSQ GGPRIEENRF EASHVLSLEN VNISHGTTQI DGIQSLPRNN SHSNNIHQNS EHAALQDGIG NEISEPRQSH HPYMLRFLDP ETVPSSIGSS
201: NPSGSVSESV GFLREDDERP ENSLDGRRSS CKRKNSDGFP GQSSASGNAS SSHQSETSLL HSRSYNPMTG LNISSTSSYP SAAHFTEEYP AGFANVIRGT
301: ASNCYPSANA AGNAESSRRN HRIRTNPAQA QDISLRNSVD TVGQLEAWLQ NRPPSHSISL NHSLGPTPLL TTASSQNQPG PPIVPGVPPI AYSFPWNGTS
401: NSRIGISSVS FSTEDRMIAA REGNNLRNMP GTSILDVVPV TDIRDMIQDQ ANWSMGSRNI SMVPSSQAVT NSGLHPTLGS TWVSHQNPPA QYPQPLPENI
501: HASLLSSGSF ESGGQRANFP MQHSGHSFSS QEVAQQIRAS LHGPQTPPHI RSTHLIRRRY DGLLGASLTM RSLTAAGEER SRMLSEIRHA LESLRRGDGL
601: RFETLILAGS DMHDRHRDMR LDVDNMSYEE LLALEERIGD VCTGLSEETI LKHLKQQKHS LGTLGVSMEH EPCCICQEEY VEGEDLGTLA CGHDFHTVCI
701: KQWLMHKNLC PICKNTALVT
001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
Arabidopsis Description
MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.