Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- extracellular 2
- golgi 3
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P21480_001 | Banana | plastid | 68.16 | 76.18 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 66.84 | 76.05 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 33.16 | 63.0 |
| Zm00001d011636_P001 | Maize | nucleus | 52.89 | 59.47 |
| Zm00001d043784_P002 | Maize | nucleus | 53.16 | 58.38 |
| OQU87370 | Sorghum | nucleus | 53.42 | 58.17 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 52.11 | 57.39 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 51.58 | 57.14 |
| HORVU3Hr1G064370.1 | Barley | plastid | 51.05 | 50.39 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 43.68 | 47.98 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 43.68 | 47.7 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 43.68 | 47.56 |
| Os05t0550000-00 | Rice | nucleus | 43.68 | 45.6 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 17.63 | 45.58 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 45.0 | 45.48 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 42.89 | 45.28 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 44.74 | 44.27 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 41.32 | 42.32 |
| HORVU1Hr1G082970.1 | Barley | plastid | 40.53 | 40.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.84 | 40.18 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 30.0 | 37.38 |
| PGSC0003DMT400078539 | Potato | plastid | 24.21 | 36.95 |
| KRH48568 | Soybean | nucleus | 34.21 | 36.72 |
| Solyc03g118840.2.1 | Tomato | nucleus | 36.58 | 35.92 |
| PGSC0003DMT400014732 | Potato | nucleus | 36.58 | 35.82 |
| KRH39137 | Soybean | nucleus | 34.74 | 35.77 |
| KRH41763 | Soybean | nucleus | 35.0 | 35.28 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 30.79 | 34.51 |
| CDX73013 | Canola | plastid | 31.84 | 34.08 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 31.32 | 33.9 |
| Bra015967.1-P | Field mustard | nucleus | 31.58 | 33.61 |
| CDY60141 | Canola | plastid | 31.58 | 33.61 |
| CDX96741 | Canola | nucleus | 32.11 | 33.52 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 5.26 | 33.33 |
| Bra016574.1-P | Field mustard | nucleus | 31.32 | 33.24 |
| CDX68213 | Canola | nucleus, plastid | 30.53 | 33.24 |
| CDY11092 | Canola | cytosol, plastid | 30.0 | 32.76 |
| CDX83878 | Canola | nucleus | 30.53 | 32.49 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 31.05 | 32.15 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 17.89 | 30.91 |
| KRH60461 | Soybean | nucleus | 35.0 | 30.86 |
| AT1G17970.1 | Thale cress | nucleus | 29.74 | 30.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.0 | 25.33 |
| AT4G00070.1 | Thale cress | nucleus | 11.58 | 24.58 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 18.16 | 18.6 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 12.11 | 18.55 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 12.11 | 18.18 |
| AT1G36950.1 | Thale cress | cytosol | 9.74 | 16.37 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 19.47 | 16.23 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 20.53 | 15.92 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 9.21 | 15.77 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 12.11 | 15.54 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 11.58 | 15.07 |
| GSMUA_Achr10P... | Banana | nucleus | 20.0 | 15.02 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 11.58 | 14.62 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 18.68 | 13.87 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 17.89 | 13.23 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 21.58 | 12.73 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 10.26 | 12.7 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 21.58 | 12.62 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 6.32 | 12.18 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 22.11 | 12.05 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 18.42 | 11.88 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 10.53 | 11.8 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 21.58 | 11.39 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 16.05 | 10.63 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 11.84 | 9.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P29390_001 | EnsemblPlants:GSMUA_Achr3T29390_001 | EnsemblPlantsGene:GSMUA_Achr3G29390_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF63 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294E47B | UniProt:M0SIV5 | MapMan:35.1 |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G29390_001]
Coordinates
chr3:+:28564042..28567258
Molecular Weight (calculated)
42552.3 Da
IEP (calculated)
9.692
GRAVY (calculated)
-0.392
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSHSLSFY LFICLSLPYS STPFQPNILL FLLPTLLPNR IVLWCGLPWR PLTPFRRRQP AAASGTSSLI PPSPSSPRPH RAADWNPLIA PPPPQPPRKK
101: KGLAAAAFRG LGCASASASQ AYAPAAAAAV RSSADWQGKR PRRRREKKKA ERKNQAIGDV WCAPGMPFAA EASVDCVVAH QPMVSRGRPD AAERIHRERP
201: YFPRRVGHRE EISTFMDSPP VLDTPFFGPD LFPSGHLRHL RGFHRAPGGL EELMMFQTRI LLGGGLDVYD RFREWRLDVD NMSYEELLEL GDKIGSVSTG
301: LREEEIARSL RKIKHSVFDA SARHLATEIE RKCSICQEEY EANDETGRLE CGHGYHMYCI KQWLLLKNAC PVCKAPVLKT
101: KGLAAAAFRG LGCASASASQ AYAPAAAAAV RSSADWQGKR PRRRREKKKA ERKNQAIGDV WCAPGMPFAA EASVDCVVAH QPMVSRGRPD AAERIHRERP
201: YFPRRVGHRE EISTFMDSPP VLDTPFFGPD LFPSGHLRHL RGFHRAPGGL EELMMFQTRI LLGGGLDVYD RFREWRLDVD NMSYEELLEL GDKIGSVSTG
301: LREEEIARSL RKIKHSVFDA SARHLATEIE RKCSICQEEY EANDETGRLE CGHGYHMYCI KQWLLLKNAC PVCKAPVLKT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.