Factsheet for GSMUA_Achr7P15850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	49.69	63.83
GSMUA_Achr6P03840_001	Banana	nucleus	35.54	62.26
Zm00001d019616_P001	Maize	cytosol	10.77	54.26
Zm00001d015453_P001	Maize	cytosol	10.77	54.26
Zm00001d013776_P001	Maize	cytosol	10.62	53.49
HORVU3Hr1G054920.1	Barley	cytosol	7.54	53.26
GSMUA_AchrUn_...	Banana	nucleus	16.77	48.44
GSMUA_AchrUn_...	Banana	nucleus	8.0	46.43
GSMUA_Achr4P06090_001	Banana	cytosol	9.69	42.86
GSMUA_Achr4P03550_001	Banana	mitochondrion	3.23	35.0
GSMUA_Achr3P05160_001	Banana	nucleus	28.77	31.75
TraesCS6B01G149700.2	Wheat	nucleus	25.54	29.43
TraesCS6A01G121400.2	Wheat	nucleus	25.38	28.3
GSMUA_Achr1P23500_001	Banana	nucleus	22.31	28.21
Os06t0695600-01	Rice	nucleus	24.77	27.81
TraesCS7D01G420400.1	Wheat	nucleus	24.31	27.57
Zm00001d015289_P001	Maize	nucleus	24.0	27.56
TraesCS7B01G328500.1	Wheat	nucleus	24.31	27.34
EES04530	Sorghum	nucleus	21.69	27.22
TraesCS6D01G111500.2	Wheat	nucleus	25.23	27.2
HORVU7Hr1G098540.1	Barley	nucleus	23.85	26.45
GSMUA_Achr9P21480_001	Banana	plastid	13.69	26.18
KXG20741	Sorghum	nucleus	23.54	25.93
Zm00001d014609_P002	Maize	nucleus	23.23	25.81
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	12.46	24.25
Os02t0150700-01	Rice	extracellular	23.54	23.87
GSMUA_Achr8P31290_001	Banana	nucleus	9.08	23.32
HORVU6Hr1G022370.10	Barley	mitochondrion	24.77	23.17
TraesCS7A01G428300.2	Wheat	nucleus	20.62	23.06
GSMUA_Achr3P29390_001	Banana	golgi, plastid	12.62	21.58
GSMUA_Achr1P23200_001	Banana	nucleus	11.54	20.83
GSMUA_Achr4P13930_001	Banana	nucleus	7.69	20.16
GSMUA_Achr3P13740_001	Banana	nucleus	14.92	19.8
GSMUA_Achr4P12850_001	Banana	nucleus	13.69	19.52
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	14.0	17.77
GSMUA_Achr4P30500_001	Banana	nucleus	9.08	17.4
GSMUA_Achr4P05140_001	Banana	nucleus	7.85	17.23
GSMUA_Achr4P04290_001	Banana	nucleus	5.85	17.12
GSMUA_Achr9P11290_001	Banana	nucleus	17.85	16.64
GSMUA_Achr3P26700_001	Banana	nucleus	7.23	16.1
GSMUA_Achr8P15680_001	Banana	nucleus	17.69	15.97
GSMUA_Achr9P24150_001	Banana	nucleus	7.23	15.61
GSMUA_Achr9P22530_001	Banana	nucleus	15.38	15.53
GSMUA_Achr5P08460_001	Banana	nucleus	13.69	15.51
GSMUA_Achr4P03540_001	Banana	nucleus	4.46	14.72
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	6.77	14.33
GSMUA_Achr4P06080_001	Banana	nucleus	8.92	12.53

Protein Annotations

EnsemblPlants:GSMUA_Achr7P15850_001	EnsemblPlants:GSMUA_Achr7T15850_001	EnsemblPlantsGene:GSMUA_Achr7G15850_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF99	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296191B	UniProt:M0THX2	MapMan:35.1

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G15850_001]

Coordinates

chr7:+:12783573..12787784

Molecular Weight (calculated)

71285.2 Da

IEP (calculated)

7.121

GRAVY (calculated)

-0.642

Length

650 amino acids

Sequence
(BLAST)

001: MALDSAGGGL PPPLPLPLVL SAPPKRDPTT TILLDPFGSD GALSSRASSG IAPPSLQSIP ISPPSFGCGA RRSKDMDDRV GKRAAGEDSR SGIVFRDQNY
101: NDRNIQYRNR LGLGAGHDTE RGSLNSTQGK YKYARAPFRS VNCKAVAGRS SRSSSTSSGC GRSFQEQQNQ TLLRESTTPE SSSKQDEIED LINTDVQVSV
201: ENLNSDAERG IEGKEGIPTT MECFEPLDSQ NISRDTTESN TSVSISKPHK QINGQFGSGY KYASTSSFVR HSGITHRNSS HVGKPTSQRL GSGAERYGLK
301: SLSCKSISDV FPADCPSSDF THHRSVYAVR KRPSDGESSA ARRKDTTAAS CGGYAVSMHS GACSSSSSRN QVMHQAVSRK TGNRPTLRDD SVSVRIQRDP
401: IGESQMRLSV QGNDKSLRLY EPIVIPQHQQ AQFSMPEVLA ESSSRSSHAL NNSYRQPCSS IRTSRRRVVD HPPSNAMQTF FGLLEDRDGY RHLNMEGVAE
501: VLLALEQIEQ NEALTTEQLL MLETSLLFGE LSFHDQHRDL RMDIDNMSYE ELLALEEKMG TVSTALSEEQ LCESLKRSIY RTAHLTVGIA VCGAEEMKCS
601: ICQEEYVGED EVGRLPCEHL YHATCIEQWL RQKNWCPVCK SSALPSHKTG

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.