Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37230 | Canola | nucleus | 94.76 | 95.25 |
| Bra039842.1-P | Field mustard | nucleus | 94.76 | 93.97 |
| PGSC0003DMT400079217 | Potato | cytosol | 10.81 | 64.65 |
| CDY69560 | Canola | nucleus | 53.04 | 61.69 |
| AT2G15530.4 | Thale cress | nucleus | 72.64 | 55.13 |
| CDY36635 | Canola | nucleus | 50.84 | 50.5 |
| Zm00001d026446_P001 | Maize | cytosol | 13.34 | 42.93 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 42.4 | 34.2 |
| CDY43590 | Canola | nucleus | 22.97 | 32.3 |
| KRH50319 | Soybean | nucleus | 38.68 | 32.03 |
| CDY32973 | Canola | nucleus | 22.13 | 31.95 |
| KRH70661 | Soybean | mitochondrion, nucleus | 38.01 | 30.86 |
| CDY17114 | Canola | nucleus | 25.34 | 28.25 |
| CDY22376 | Canola | nucleus | 29.05 | 27.97 |
| CDX71531 | Canola | nucleus | 29.9 | 27.79 |
| Solyc01g107940.2.1 | Tomato | nucleus | 31.93 | 26.73 |
| PGSC0003DMT400066252 | Potato | nucleus | 31.93 | 26.43 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 32.26 | 26.31 |
| CDY17061 | Canola | nucleus | 26.86 | 26.24 |
| Solyc01g107930.2.1 | Tomato | nucleus | 31.76 | 26.18 |
| CDY43220 | Canola | nucleus | 26.18 | 25.45 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 30.74 | 25.28 |
| CDY13429 | Canola | cytosol | 10.98 | 25.19 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 24.32 | 24.91 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 29.22 | 24.82 |
| EES11547 | Sorghum | nucleus | 26.69 | 23.94 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 26.18 | 23.7 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 26.69 | 23.58 |
| Zm00001d002080_P002 | Maize | nucleus | 26.18 | 23.38 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 26.18 | 23.17 |
| CDX77848 | Canola | nucleus | 8.28 | 23.11 |
| Os04t0648800-01 | Rice | nucleus | 26.01 | 23.09 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 26.01 | 23.02 |
| Zm00001d026445_P001 | Maize | nucleus | 25.17 | 22.75 |
| CDY67192 | Canola | nucleus | 8.11 | 22.54 |
| EES10483 | Sorghum | nucleus | 26.35 | 22.41 |
| CDX97032 | Canola | plastid | 12.67 | 22.39 |
| Zm00001d004300_P003 | Maize | nucleus | 26.18 | 22.33 |
| CDY71882 | Canola | plastid | 13.18 | 22.29 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 26.35 | 22.25 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 26.18 | 22.11 |
| Zm00001d025027_P002 | Maize | nucleus | 25.84 | 21.98 |
| CDY11092 | Canola | cytosol, plastid | 12.84 | 21.84 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 25.84 | 21.83 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 26.01 | 21.81 |
| CDX68213 | Canola | nucleus, plastid | 12.84 | 21.78 |
| Os04t0185500-01 | Rice | nucleus | 25.51 | 21.3 |
| CDX88140 | Canola | nucleus | 17.06 | 20.95 |
| CDY68658 | Canola | nucleus | 16.55 | 20.9 |
| CDX73013 | Canola | plastid | 12.33 | 20.56 |
| CDY60141 | Canola | plastid | 12.33 | 20.45 |
| CDX83878 | Canola | nucleus | 12.33 | 20.45 |
| CDX96741 | Canola | nucleus | 12.33 | 20.05 |
| CDX78393 | Canola | nucleus | 16.72 | 20.04 |
| CDX91624 | Canola | nucleus | 7.43 | 20.0 |
| CDX85750 | Canola | nucleus | 12.84 | 19.69 |
| CDY27083 | Canola | nucleus | 7.26 | 19.63 |
| CDX70363 | Canola | nucleus | 16.05 | 19.55 |
| CDX95473 | Canola | nucleus | 15.03 | 19.18 |
| CDY40109 | Canola | nucleus | 5.91 | 18.82 |
| CDY26006 | Canola | nucleus | 14.36 | 18.4 |
| CDX93901 | Canola | nucleus | 7.43 | 18.33 |
| CDY24110 | Canola | nucleus | 14.19 | 18.26 |
| CDX97044 | Canola | nucleus | 15.71 | 18.24 |
| CDY46757 | Canola | nucleus | 16.39 | 18.2 |
| CDY53710 | Canola | nucleus | 7.43 | 18.18 |
| CDX79718 | Canola | nucleus | 16.22 | 18.08 |
| CDY47948 | Canola | nucleus | 15.2 | 17.89 |
| CDX82450 | Canola | nucleus | 13.51 | 17.86 |
| CDY25871 | Canola | nucleus | 14.36 | 17.78 |
| CDX69813 | Canola | mitochondrion | 15.88 | 17.64 |
| CDY55435 | Canola | nucleus | 15.71 | 17.61 |
| CDY55839 | Canola | nucleus | 14.36 | 17.38 |
| CDY68424 | Canola | nucleus | 15.71 | 17.32 |
| CDX75805 | Canola | cytosol | 12.67 | 16.93 |
| CDY24595 | Canola | nucleus | 8.95 | 16.83 |
| CDY68521 | Canola | nucleus | 12.5 | 16.78 |
| CDY25357 | Canola | nucleus | 8.95 | 16.56 |
| CDX97629 | Canola | nucleus | 12.33 | 16.55 |
| CDX91625 | Canola | cytosol | 6.25 | 16.16 |
| CDY00512 | Canola | nucleus | 7.43 | 16.12 |
| CDY31919 | Canola | nucleus | 7.43 | 16.12 |
| CDY63645 | Canola | nucleus | 12.5 | 16.02 |
| CDY13433 | Canola | nucleus | 12.33 | 15.67 |
| CDY33429 | Canola | nucleus | 8.45 | 15.15 |
| CDY42218 | Canola | nucleus | 8.45 | 14.97 |
| CDY27082 | Canola | cytosol | 5.91 | 14.71 |
Protein Annotations
| EnsemblPlants:CDY62314 | EnsemblPlantsGene:GSBRNA2T00036164001 | Gene3D:3.30.40.10 | GO:A0A078JD67 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF101 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY62314 | ProteinID:CDY62314.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE6CE4 |
| UniProt:A0A078JD67 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng39930DBnaCnng39930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD67]
Coordinates
chrLK034129:+:28710..31681
Molecular Weight (calculated)
63564.8 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.585
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPMQGQQST GGSSTDLNQG DNEPVYSAQS SLNTMMNPVD NGPTYESPSS HNWWRLGESS SVSGPSDIKT NQQLQHGGVH AAGYNMRNGP AFLRGSSSNA
101: ANMSMDMDSS DDDYGARPSG LVFRHSSYGS SLGSSVQATG ESSSGPAASS LDGWGSSCKR KALEAAIAAS AAPPSPTLPD CSGLSHYGAS SSLSLATPSQ
201: TSQNRTEHMF GSGGGGGRAV ATNAFHSDTS SRPGRRLNLR HPQESVGFSL SHHSGGSMQQ SLPLNSPSAD PQVHLPALTR NIPQFAWDTS LSSRASTSSG
301: IGMPAELFGP PRSNPEQPPM FAPPVHDQSI WSFTRGNPPS TIDAQQLSPA WIPPPQSAPP PRASELSPWS LFPSVESQST TGHGPAASLP LLPSVSSNEA
401: ATAMPSSSSS HRSRQRRSGL LSERQNELLH LRHLGRSLAA DSDGRNHLIS EIRQVLTAMR RGENLRMEDY MVFDPLIFQS MTEMHDRHRE MRLDVDNMSY
501: EELLALGERI GDVSTGLRED VILKTMKQHK CTSSSAELHQ DIEPCCICQE EYAEGDDLGT LECGHEFHKD CIKQWVMLKN LCPICKTVAL TT
101: ANMSMDMDSS DDDYGARPSG LVFRHSSYGS SLGSSVQATG ESSSGPAASS LDGWGSSCKR KALEAAIAAS AAPPSPTLPD CSGLSHYGAS SSLSLATPSQ
201: TSQNRTEHMF GSGGGGGRAV ATNAFHSDTS SRPGRRLNLR HPQESVGFSL SHHSGGSMQQ SLPLNSPSAD PQVHLPALTR NIPQFAWDTS LSSRASTSSG
301: IGMPAELFGP PRSNPEQPPM FAPPVHDQSI WSFTRGNPPS TIDAQQLSPA WIPPPQSAPP PRASELSPWS LFPSVESQST TGHGPAASLP LLPSVSSNEA
401: ATAMPSSSSS HRSRQRRSGL LSERQNELLH LRHLGRSLAA DSDGRNHLIS EIRQVLTAMR RGENLRMEDY MVFDPLIFQS MTEMHDRHRE MRLDVDNMSY
501: EELLALGERI GDVSTGLRED VILKTMKQHK CTSSSAELHQ DIEPCCICQE EYAEGDDLGT LECGHEFHKD CIKQWVMLKN LCPICKTVAL TT
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.