CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026445_P001	Maize	nucleus	90.61	91.3
Zm00001d002080_P002	Maize	nucleus	91.52	91.1
Os04t0648800-01	Rice	nucleus	73.64	72.86
Zm00001d026446_P001	Maize	cytosol	19.85	71.2
TraesCS2B01G542200.2	Wheat	nucleus	71.21	70.15
TraesCS2D01G516000.1	Wheat	nucleus	70.15	69.21
TraesCS2A01G514400.3	Wheat	nucleus	70.15	69.21
HORVU2Hr1G113930.2	Barley	nucleus	68.48	69.11
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	60.45	69.03
PGSC0003DMT400079217	Potato	cytosol	10.15	67.68
VIT_03s0063g00160.t01	Wine grape	nucleus	33.79	30.38
OQU80744	Sorghum	mitochondrion	6.36	29.17
Bra015221.1-P	Field mustard	nucleus	24.55	27.14
KRH50319	Soybean	nucleus	29.39	27.13
AT4G34040.1	Thale cress	nucleus	26.97	26.73
CDY62314	Canola	nucleus	23.94	26.69
CDY37230	Canola	nucleus	23.79	26.66
Bra039842.1-P	Field mustard	nucleus	23.94	26.47
EES10483	Sorghum	nucleus	27.42	26.01
KRH70661	Soybean	mitochondrion, nucleus	28.64	25.93
Solyc01g107940.2.1	Tomato	nucleus	26.97	25.18
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	27.58	25.07
EER99218	Sorghum	nucleus	6.52	24.57
PGSC0003DMT400066252	Potato	nucleus	26.52	24.48
Solyc01g107930.2.1	Tomato	nucleus	26.21	24.09
OQU87370	Sorghum	nucleus	12.12	22.92
EES12797	Sorghum	nucleus	12.73	22.46
AT2G15530.4	Thale cress	nucleus	26.52	22.44
OQU80147	Sorghum	nucleus	11.36	20.95
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	11.82	20.74
KXG40075	Sorghum	cytosol	7.73	20.48
EES11283	Sorghum	nucleus	7.58	20.24
EES19093	Sorghum	nucleus	15.61	19.14
EES03404	Sorghum	nucleus	15.0	19.0
EES00281	Sorghum	nucleus	14.7	18.84
EES15239	Sorghum	nucleus	8.79	18.47
EES04530	Sorghum	nucleus	14.09	17.95
KXG22536	Sorghum	nucleus	13.33	17.32
EER97094	Sorghum	nucleus	8.33	16.98
KXG20741	Sorghum	nucleus	15.15	16.95
KXG19166	Sorghum	nucleus	6.21	15.07

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8068482	UniProt:C5Y926	EnsemblPlants:EES11547	ProteinID:EES11547
ProteinID:EES11547.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF127	SMART:SM00184	EnsemblPlantsGene:SORBI_3006G240400	SUPFAM:SSF57850	unigene:Sbi.4387	UniParc:UPI0001A86D98
RefSeq:XP_002447219.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:58107163..58114954

Molecular Weight (calculated)

72077.4 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.614

Length

660 amino acids

Sequence
(BLAST)

001: MQGQRNSMEH YADVFGFDIA SSSGNPVMDQ QSYWNNVLGS VESQNPQGYQ MNHSDAAMPY GNEAQQDGTF LGFWESGEAS SSGSALNYGS SNNVKTEHLN
101: IGGGLRIGER QLVADNGISL DVDINLNANV NDLCGQSSNV NCTSQGPEQY GGSDRNGINS QPTDLRLHPY RTFLLGAEQA DSFTLNPSEN PLSDFSLMQE
201: SIDQRAGSSL DGRRLACKRK NIEGANGQSS AGASTSFSLR NDNAFYNIAS SSYNPAPIRN SSSPNCLPVP SSIEDQLPQY GTNAGLSAGT YDLNGGVHNA
301: GNSQRSFRAR TTTSQQIAPC SVWPSSNAIR LSNSWNHQPP HFQNAFDGPQ EVIPVVSSLN LQYQHPVNVS GVPQAANRFT GHGASSSRAT SLENRNLGSE
401: EVTRRNVVPT NYTDLVPPSA VDLRRLVPEP SNWSSDVRGT AISGSIPPVS RANNSSAANP PAGFNHQNLT RRHPRNLSEE IGRLSGALRG HQPPRLRSGF
501: LLERQGDGVW GVPLSTRGRE GRRLMEIRNA LEMIHRGENV RLESIFYGGV EIHDRHRDMR LDIDNMSYEE LLALEERIGD VSTGLSEEAV IKLLKQRKFS
601: SWRLKASLDP EPCCICQEEY VDGDDLGRLD CGHDFHACCI KQWLVVKNVC PICKNTALKT

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.