Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006070.1-P | Field mustard | nucleus | 94.53 | 94.34 |
| CDX70363 | Canola | nucleus | 86.44 | 87.86 |
| CDX97032 | Canola | plastid | 55.26 | 81.49 |
| CDY71882 | Canola | plastid | 57.09 | 80.57 |
| CDX95473 | Canola | nucleus | 72.67 | 77.37 |
| CDX97044 | Canola | nucleus | 76.92 | 74.51 |
| CDX85750 | Canola | nucleus | 57.69 | 73.83 |
| CDX69813 | Canola | mitochondrion | 77.33 | 71.67 |
| AT5G10650.2 | Thale cress | nucleus | 75.51 | 71.05 |
| CDY40109 | Canola | nucleus | 23.48 | 62.37 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.32 | 55.43 |
| CDX88140 | Canola | nucleus | 51.82 | 53.11 |
| CDY68658 | Canola | nucleus | 50.0 | 52.67 |
| Zm00001d015453_P001 | Maize | cytosol | 13.16 | 50.39 |
| Zm00001d013776_P001 | Maize | cytosol | 13.16 | 50.39 |
| Zm00001d019616_P001 | Maize | cytosol | 13.16 | 50.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.24 | 44.44 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 47.17 | 42.36 |
| KRH52597 | Soybean | nucleus | 45.75 | 41.77 |
| KRH04957 | Soybean | nucleus | 44.53 | 41.35 |
| KRH16134 | Soybean | nucleus | 43.32 | 38.56 |
| PGSC0003DMT400067670 | Potato | nucleus | 41.09 | 38.45 |
| Solyc12g096420.1.1 | Tomato | nucleus | 42.51 | 38.11 |
| Solyc08g006460.2.1 | Tomato | nucleus | 40.28 | 37.48 |
| PGSC0003DMT400075959 | Potato | nucleus | 40.28 | 36.51 |
| KRH61936 | Soybean | nucleus | 40.49 | 35.91 |
| CDY13429 | Canola | cytosol | 18.02 | 34.5 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 30.36 | 29.18 |
| Os06t0695600-01 | Rice | nucleus | 33.6 | 28.67 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.4 | 28.55 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 33.81 | 28.5 |
| KXG20741 | Sorghum | nucleus | 34.01 | 28.47 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 33.6 | 28.47 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 32.39 | 28.37 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 32.59 | 28.1 |
| Zm00001d014609_P002 | Maize | nucleus | 33.0 | 27.86 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 20.24 | 27.1 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 20.45 | 27.08 |
| Zm00001d015289_P001 | Maize | nucleus | 30.97 | 27.03 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 20.45 | 26.93 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 32.79 | 26.87 |
| Os08t0241400-00 | Rice | nucleus | 20.24 | 26.53 |
| EES12797 | Sorghum | nucleus | 20.04 | 26.47 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 19.84 | 26.34 |
| EES04530 | Sorghum | nucleus | 27.13 | 25.87 |
| Os02t0150700-01 | Rice | extracellular | 33.2 | 25.59 |
| Zm00001d024406_P002 | Maize | nucleus | 18.42 | 25.42 |
| OQU80147 | Sorghum | nucleus | 18.22 | 25.14 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 28.95 | 24.61 |
| Zm00001d026248_P001 | Maize | nucleus | 18.62 | 24.21 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 19.43 | 24.18 |
| CDX73013 | Canola | plastid | 17.21 | 23.94 |
| CDY60141 | Canola | plastid | 17.21 | 23.81 |
| CDX68213 | Canola | nucleus, plastid | 16.6 | 23.5 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 32.79 | 23.31 |
| CDY11092 | Canola | cytosol, plastid | 16.4 | 23.28 |
| CDY63645 | Canola | nucleus | 21.66 | 23.16 |
| CDY13433 | Canola | nucleus | 21.26 | 22.53 |
| Os04t0603200-01 | Rice | nucleus | 14.98 | 22.49 |
| CDX96741 | Canola | nucleus | 16.19 | 21.98 |
| CDX83878 | Canola | nucleus | 15.59 | 21.57 |
| CDX77848 | Canola | nucleus | 9.11 | 21.23 |
| CDY67192 | Canola | nucleus | 9.11 | 21.13 |
| CDX93901 | Canola | nucleus | 10.12 | 20.83 |
| CDY53710 | Canola | nucleus | 10.12 | 20.66 |
| CDY27083 | Canola | nucleus | 8.1 | 18.26 |
| CDX91624 | Canola | nucleus | 8.1 | 18.18 |
| CDY00512 | Canola | nucleus | 9.72 | 17.58 |
| CDY31919 | Canola | nucleus | 9.72 | 17.58 |
| CDY43590 | Canola | nucleus | 14.98 | 17.58 |
| CDY32973 | Canola | nucleus | 14.37 | 17.32 |
| CDY26006 | Canola | nucleus | 15.99 | 17.1 |
| CDY68521 | Canola | nucleus | 15.18 | 17.01 |
| CDY37230 | Canola | nucleus | 20.24 | 16.98 |
| CDY24110 | Canola | nucleus | 15.79 | 16.96 |
| CDX97629 | Canola | nucleus | 14.98 | 16.78 |
| CDX82450 | Canola | nucleus | 15.18 | 16.74 |
| CDY62314 | Canola | nucleus | 20.04 | 16.72 |
| CDX75805 | Canola | cytosol | 14.98 | 16.7 |
| CDY24595 | Canola | nucleus | 10.12 | 15.87 |
| CDX79718 | Canola | nucleus | 17.0 | 15.82 |
| CDY46757 | Canola | nucleus | 16.8 | 15.57 |
| CDY17114 | Canola | nucleus | 16.6 | 15.44 |
| CDY25357 | Canola | nucleus | 9.92 | 15.31 |
| CDY25871 | Canola | nucleus | 14.78 | 15.27 |
| CDY33429 | Canola | nucleus | 10.12 | 15.15 |
| CDY55839 | Canola | nucleus | 14.98 | 15.13 |
| CDY42218 | Canola | nucleus | 10.12 | 14.97 |
| CDY55435 | Canola | nucleus | 15.59 | 14.58 |
| CDY22376 | Canola | nucleus | 18.02 | 14.47 |
| CDX91625 | Canola | cytosol | 6.68 | 14.41 |
| CDY68424 | Canola | nucleus | 15.38 | 14.15 |
| CDY17061 | Canola | nucleus | 17.21 | 14.03 |
| CDY43220 | Canola | nucleus | 17.0 | 13.79 |
| CDX71531 | Canola | nucleus | 17.61 | 13.66 |
| CDY27082 | Canola | cytosol | 6.48 | 13.45 |
| CDY47948 | Canola | nucleus | 8.3 | 8.15 |
| CDY69560 | Canola | nucleus | 7.29 | 7.07 |
| CDY36635 | Canola | nucleus | 7.29 | 6.04 |
Protein Annotations
| EnsemblPlants:CDX78393 | EnsemblPlantsGene:GSBRNA2T00129769001 | Gene3D:3.30.40.10 | GO:A0A078CTB3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX78393 | ProteinID:CDX78393.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDF7AA |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA03g03050D
Coordinates
chrLK031815:-:577622..580023
Molecular Weight (calculated)
53819.0 Da
IEP (calculated)
9.684
GRAVY (calculated)
-0.749
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRCAGKRLV VPGKASGPVL RENMYKKDEN NVSFCRHTGC SAKVTPRIGF TDNNRKVGRP PICSSSNGKE IAGSSSRTTP GGFGYLRKPA KGRRQPSSNL
101: ETDSSETSSI HDDLAAAKPT LPRLKTKRVI QSQNTVSGGV VMTKAGRSSK GTNTSSHQKS DLDTRVGPSV SSSSGSDRTV RDGLSRNGLR NLRCNSMSNV
201: LPTSSSSATK ISVSKKKNSD GESSSSSKGS KSSMSMLTGM NQSSSHGNGI TFSDNRRNRV VPTIRDNGVV STSRSGRRGA VASPVTSRQT PHRATPTNSS
301: SSRSSNGYSR QNRSTGRLRS MMPGSPSLVN RDGLSRYNIN GIAEILLALE RIEHDQELTY EQLASLETNL FLSDMIRFYD QHSDMRLDID NMSYEELLAL
401: GDEMGTVSTA LSEEALSRSL KRSIYQETDE TGAISLNKDD DIKCSICQEE YVDGDEVGTM PCEHMYHVSC VQQWLRMKNW CPICKTSAEE EKSL
101: ETDSSETSSI HDDLAAAKPT LPRLKTKRVI QSQNTVSGGV VMTKAGRSSK GTNTSSHQKS DLDTRVGPSV SSSSGSDRTV RDGLSRNGLR NLRCNSMSNV
201: LPTSSSSATK ISVSKKKNSD GESSSSSKGS KSSMSMLTGM NQSSSHGNGI TFSDNRRNRV VPTIRDNGVV STSRSGRRGA VASPVTSRQT PHRATPTNSS
301: SSRSSNGYSR QNRSTGRLRS MMPGSPSLVN RDGLSRYNIN GIAEILLALE RIEHDQELTY EQLASLETNL FLSDMIRFYD QHSDMRLDID NMSYEELLAL
401: GDEMGTVSTA LSEEALSRSL KRSIYQETDE TGAISLNKDD DIKCSICQEE YVDGDEVGTM PCEHMYHVSC VQQWLRMKNW CPICKTSAEE EKSL
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.