Factsheet for Bra006070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78393	Canola	nucleus	94.34	94.53
CDX70363	Canola	nucleus	86.67	88.27
Bra009015.1-P	Field mustard	plastid	77.17	71.67
AT5G10650.2	Thale cress	nucleus	75.56	71.24
Bra028576.1-P	Field mustard	cytosol	38.59	67.49
HORVU3Hr1G054920.1	Barley	cytosol	10.3	55.43
Zm00001d013776_P001	Maize	cytosol	13.13	50.39
Zm00001d015453_P001	Maize	cytosol	13.13	50.39
Zm00001d019616_P001	Maize	cytosol	13.13	50.39
Bra009800.1-P	Field mustard	nucleus	40.4	48.78
GSMUA_AchrUn_...	Banana	nucleus	20.61	45.33
VIT_04s0008g02390.t01	Wine grape	nucleus	46.87	42.18
KRH52597	Soybean	nucleus	45.45	41.59
KRH04957	Soybean	nucleus	44.44	41.35
PGSC0003DMT400067670	Potato	nucleus	41.21	38.64
KRH16134	Soybean	nucleus	43.23	38.56
Solyc08g006460.2.1	Tomato	nucleus	40.4	37.66
Solyc12g096420.1.1	Tomato	nucleus	41.62	37.39
Bra024009.1-P	Field mustard	nucleus	13.13	37.14
PGSC0003DMT400075959	Potato	nucleus	40.0	36.33
KRH61936	Soybean	nucleus	40.0	35.55
GSMUA_Achr1P23500_001	Banana	nucleus	30.1	28.99
Os06t0695600-01	Rice	nucleus	33.74	28.84
TraesCS6B01G149700.2	Wheat	nucleus	32.73	28.72
TraesCS6A01G121400.2	Wheat	nucleus	33.74	28.64
TraesCS7B01G328500.1	Wheat	nucleus	33.33	28.55
HORVU7Hr1G098540.1	Barley	nucleus	33.74	28.5
KXG20741	Sorghum	nucleus	33.54	28.14
TraesCS7D01G420400.1	Wheat	nucleus	32.53	28.1
Zm00001d014609_P002	Maize	nucleus	32.53	27.52
Zm00001d015289_P001	Maize	nucleus	31.31	27.39
TraesCS6D01G111500.2	Wheat	nucleus	32.93	27.03
TraesCS2A01G437200.1	Wheat	nucleus	20.0	26.83
TraesCS2B01G456100.1	Wheat	nucleus	20.2	26.81
HORVU2Hr1G101370.5	Barley	nucleus	20.2	26.67
Os08t0241400-00	Rice	nucleus	20.2	26.53
EES12797	Sorghum	nucleus	20.0	26.47
EES04530	Sorghum	nucleus	27.47	26.25
TraesCS2D01G432800.1	Wheat	nucleus	19.6	26.08
Os02t0150700-01	Rice	extracellular	33.54	25.9
Bra019499.1-P	Field mustard	nucleus	8.48	25.61
Zm00001d024406_P002	Maize	nucleus	18.38	25.42
OQU80147	Sorghum	nucleus	18.18	25.14
TraesCS7A01G428300.2	Wheat	nucleus	28.89	24.61
Zm00001d026248_P001	Maize	nucleus	18.59	24.21
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	18.99	23.68
Bra003830.1-P	Field mustard	nucleus, plastid	16.16	23.6
HORVU6Hr1G022370.10	Barley	mitochondrion	33.13	23.6
Bra015967.1-P	Field mustard	nucleus	16.97	23.53
Os04t0603200-01	Rice	nucleus	14.95	22.49
Bra024007.1-P	Field mustard	nucleus	21.01	22.27
Bra016574.1-P	Field mustard	nucleus	15.76	21.79
Bra040450.1-P	Field mustard	nucleus	10.3	21.07
Bra027467.1-P	Field mustard	nucleus	14.55	17.56
Bra039659.1-P	Field mustard	nucleus	15.96	17.17
Bra027282.1-P	Field mustard	nucleus	15.35	17.08
Bra001582.1-P	Field mustard	nucleus	14.95	16.93
Bra039842.1-P	Field mustard	nucleus	20.2	16.75
Bra022580.1-P	Field mustard	cytosol	5.86	16.11
Bra038109.1-P	Field mustard	nucleus	15.35	15.83
Bra023101.1-P	Field mustard	nucleus	16.97	15.76
Bra022466.1-P	Field mustard	nucleus	10.3	15.74
Bra015221.1-P	Field mustard	nucleus	18.59	15.41
Bra038240.1-P	Field mustard	nucleus	10.1	15.02
Bra033652.1-P	Field mustard	nucleus	18.59	14.96
Bra017205.1-P	Field mustard	nucleus	15.35	14.15
Bra028293.1-P	Field mustard	nucleus	6.67	13.81
Bra022579.1-P	Field mustard	cytosol	3.64	13.64
Bra014043.1-P	Field mustard	nucleus	15.35	13.19
Bra036336.1-P	Field mustard	nucleus	8.69	8.55

Protein Annotations

EnsemblPlants:Bra006070.1	EnsemblPlants:Bra006070.1-P	EnsemblPlantsGene:Bra006070	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253F89A	UniProt:M4CPD2	MapMan:35.1

Description

AT5G10650 (E=5e-092) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:1859151..1861055

Molecular Weight (calculated)

53771.6 Da

IEP (calculated)

9.576

GRAVY (calculated)

-0.773

Length

495 amino acids

Sequence
(BLAST)

001: MDRCAGKRLV VPGKASGSVL RENMYKKDEN NVSFGRRIGC SAKVTPGVGF TDNNRKVGRP PICSSSNGKE IAGSSSRTTP GGFGYLRKPA KGRRQPSSNL
101: ETESSETSSV HDDSAAAEPT LPRLKTKRGI QSQNTVSGGV VMTKAGRSNR GTSTSSHQES DLDTRVGPSV SSSSGSDRTV RDGLSRNGLR NLRCNSMSNV
201: LPTSSSSATK ISVSKKKNSD GESSSSSKKG NKSSVSVLKG MNQSSSHENG TTLSDNRRNR VVPTIRDSGV VSSSRSGRRG AVASPVTSRQ TPHRATPTNS
301: SSSRSSNSYS RQNRSTGRLR SLMPGSPSLV NRDGLSRYNI NGIAEILLAL ERIEHDQELT YEQLASLETN LFLSDMIRFY DQHSDMRLDI DNMSYEELLA
401: LGDEMGTVST ALSEEALSRS LKRSIYQETD ETGAISLKKD DDIKCSICQE EYVDGDEVGT MPCEHMYHVS CVQQWLRMKN WCPICKTSAE EEKSL

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.