Factsheet for Bra022580.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27082	Canola	cytosol	97.22	73.53
AT5G52155.1	Thale cress	nucleus	45.56	45.05
Bra022579.1-P	Field mustard	cytosol	16.67	22.73
Bra028293.1-P	Field mustard	nucleus	23.89	17.99
PGSC0003DMT400037132	Potato	nucleus	23.33	17.57
Solyc03g026150.2.1	Tomato	nucleus	22.78	17.3
Bra019499.1-P	Field mustard	nucleus	15.56	17.07
Bra040450.1-P	Field mustard	nucleus	21.67	16.12
Os04t0571200-01	Rice	nucleus	22.22	15.75
EES11283	Sorghum	nucleus	21.11	15.38
Bra024009.1-P	Field mustard	nucleus	13.89	14.29
TraesCS2B01G418300.1	Wheat	cytosol	20.0	14.23
TraesCS2A01G400200.1	Wheat	nucleus	20.0	14.23
TraesCS2D01G397800.1	Wheat	cytosol	20.0	14.01
HORVU2Hr1G094980.4	Barley	cytosol	20.0	13.58
VIT_12s0028g01220.t01	Wine grape	nucleus	15.56	12.79
Zm00001d002624_P003	Maize	cytosol	21.11	11.31
Bra038240.1-P	Field mustard	nucleus	20.0	10.81
Bra022466.1-P	Field mustard	nucleus	18.89	10.49
GSMUA_Achr4P30500_001	Banana	nucleus	17.78	9.44
Bra015967.1-P	Field mustard	nucleus	17.78	8.96
Bra003830.1-P	Field mustard	nucleus, plastid	16.11	8.55
Bra016574.1-P	Field mustard	nucleus	16.11	8.1
Bra027467.1-P	Field mustard	nucleus	16.67	7.32
Bra039659.1-P	Field mustard	nucleus	18.33	7.17
Bra038109.1-P	Field mustard	nucleus	18.89	7.08
Bra024007.1-P	Field mustard	nucleus	18.33	7.07
Bra001582.1-P	Field mustard	nucleus	16.11	6.64
Bra027282.1-P	Field mustard	nucleus	15.0	6.07
Bra006070.1-P	Field mustard	nucleus	16.11	5.86
Bra023101.1-P	Field mustard	nucleus	17.22	5.82
Bra017205.1-P	Field mustard	nucleus	16.67	5.59
Bra033652.1-P	Field mustard	nucleus	18.33	5.37
Bra009015.1-P	Field mustard	plastid	15.56	5.25
Bra015221.1-P	Field mustard	nucleus	17.22	5.19
Bra009800.1-P	Field mustard	nucleus	11.67	5.12
Bra039842.1-P	Field mustard	nucleus	16.67	5.03
Bra014043.1-P	Field mustard	nucleus	15.56	4.86
Bra028576.1-P	Field mustard	cytosol	1.11	0.71
Bra036336.1-P	Field mustard	nucleus	1.67	0.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:BB	EnsemblPlantsGene:Bra022580	EnsemblPlants:Bra022580.1	EnsemblPlants:Bra022580.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0046621
InterPro:IPR001841	InterPro:IPR013083	UniProt:M4E1D2	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF75	SUPFAM:SSF57850	UniParc:UPI0002546FD8	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G52140 (E=8e-030) | protein binding / zinc ion binding

Coordinates

chrA02:+:8757324..8758332

Molecular Weight (calculated)

20567.4 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.501

Length

180 amino acids

Sequence
(BLAST)

001: MIPPLRVCPP ECPQRIVCPY CPVPYPHGHD TLPFVCLYCP VPYFHVHDCP PSREAFTGHI YGNSSTDMYR RSFSDIGSSS GHGDSENMTL EVVNELIESV
101: GDVNRGLPQS KVSRLPTHKY GETPKCRWWW EKKKKFVSDD SQCSICLIDY EKGDRITTLT PCNHIYHTDC ISEWLKKSTV

Best Arabidopsis Sequence Match ( AT5G52155.1 )
(BLAST)

001: MFRNRAYNFH GCQACIVNSQ YHGCPCCRQS QYHSPYCSTP FFHLHDVPST SGRFYGYNSY GNSSPDQHTL RRSSSDISLH SFYNEGLNEV EASVGDESGG
101: VPEWKISKFR THKYGKKLKF RWWWQKKKKF VADDSQCSIC LVDYEKGDKI MTLPCNHIYH KDCISYWFKE NRVCCVCKRE VY

Arabidopsis Description

E3 ubiquitin ligase BIG BROTHER-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BFJ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.