Factsheet for Bra040450.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53710	Canola	nucleus	100.0	100.0
CDX93901	Canola	nucleus	96.28	97.08
AT3G63530.2	Thale cress	cytosol	88.43	86.29
KRH20832	Soybean	nucleus	55.79	54.66
KRH27487	Soybean	cytosol, nucleus, plastid	55.37	54.25
VIT_13s0064g01030.t01	Wine grape	nucleus	53.31	52.23
PGSC0003DMT400017553	Potato	nucleus	43.39	43.21
Bra019499.1-P	Field mustard	nucleus	22.73	33.54
Solyc01g087060.2.1	Tomato	nucleus	42.98	28.11
Bra022579.1-P	Field mustard	cytosol	11.98	21.97
Bra022580.1-P	Field mustard	cytosol	16.12	21.67
Bra022466.1-P	Field mustard	nucleus	28.93	21.6
Bra038240.1-P	Field mustard	nucleus	28.93	21.02
Bra024009.1-P	Field mustard	nucleus	13.22	18.29
Bra028293.1-P	Field mustard	nucleus	16.94	17.15
Bra015967.1-P	Field mustard	nucleus	17.36	11.76
Bra039659.1-P	Field mustard	nucleus	21.9	11.52
Bra027282.1-P	Field mustard	nucleus	20.66	11.24
Bra027467.1-P	Field mustard	nucleus	19.01	11.22
Bra003830.1-P	Field mustard	nucleus, plastid	15.7	11.21
Bra016574.1-P	Field mustard	nucleus	16.53	11.17
Bra001582.1-P	Field mustard	nucleus	19.83	10.98
Bra038109.1-P	Field mustard	nucleus	20.66	10.42
Bra006070.1-P	Field mustard	nucleus	21.07	10.3
Bra017205.1-P	Field mustard	nucleus	22.31	10.06
Bra023101.1-P	Field mustard	nucleus	21.9	9.94
Bra009015.1-P	Field mustard	plastid	20.25	9.19
Bra024007.1-P	Field mustard	nucleus	17.36	8.99
Bra033652.1-P	Field mustard	nucleus	21.9	8.62
Bra009800.1-P	Field mustard	nucleus	13.64	8.05
Bra014043.1-P	Field mustard	nucleus	18.59	7.81
Bra039842.1-P	Field mustard	nucleus	18.18	7.37
Bra015221.1-P	Field mustard	nucleus	18.18	7.37
Bra028576.1-P	Field mustard	cytosol	4.55	3.89
Bra036336.1-P	Field mustard	nucleus	4.55	2.19

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:BB	EnsemblPlantsGene:Bra040450	EnsemblPlants:Bra040450.1	EnsemblPlants:Bra040450.1-P
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0040007	GO:GO:0046621	GO:GO:0048437	GO:GO:0051865	GO:GO:1900057	InterPro:IPR001841
InterPro:IPR013083	UniProt:M4FH72	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF75
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002545268	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:

Description

AT3G63530 (E=5e-126) BB, BB2 | BB (BIG BROTHER); protein binding / ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA04:-:95047..96291

Molecular Weight (calculated)

27355.6 Da

IEP (calculated)

4.562

GRAVY (calculated)

-0.639

Length

242 amino acids

Sequence
(BLAST)

001: MNGDRPDSHY PETGFPYAAS ASYMDFYGGA AQDPLNYAHA GTMHPHQDSL YWTMNTNAYK FGFSGSDNAS FYGSYDLNDH LSRMSIGRTN WEYLPMVNVD
101: ESVPRSVQVG DTDDHSDAEE CIAIEHDPES PQVSWQDDID PDTMTYEELI ELGEAVGSES RGLSQELIET LPTRKYKFGS FFSRKRAGDR CVICQLKYKI
201: GEKQMNLPCK HVYHSECISK WLSINKICPV CNSEVFGEPS IH

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.