Factsheet for Bra039659.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24110	Canola	nucleus	99.57	99.57
AT1G53190.1	Thale cress	nucleus	83.04	77.33
Bra038109.1-P	Field mustard	nucleus	79.57	76.25
Bra001582.1-P	Field mustard	nucleus	45.22	47.6
Bra027282.1-P	Field mustard	nucleus	43.7	45.17
VIT_19s0014g01850.t01	Wine grape	nucleus	38.04	32.53
KRH55161	Soybean	nucleus	29.57	29.69
KRH30071	Soybean	cytosol	21.74	29.07
KRH26195	Soybean	nucleus	28.7	28.82
KRH22017	Soybean	nucleus	32.61	28.41
Solyc12g014070.1.1	Tomato	nucleus	32.17	27.66
VIT_03s0088g01090.t01	Wine grape	nucleus	27.39	27.57
VIT_03s0097g00680.t01	Wine grape	nucleus	25.22	27.55
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	23.26	27.23
PGSC0003DMT400039631	Potato	nucleus	31.52	27.05
PGSC0003DMT400054921	Potato	nucleus	30.43	26.98
Solyc10g007140.2.1	Tomato	nucleus	30.22	26.78
KRH55165	Soybean	nucleus	18.04	26.69
Bra024009.1-P	Field mustard	nucleus	10.0	26.29
Bra019499.1-P	Field mustard	nucleus	8.91	25.0
KRH55090	Soybean	nucleus	19.57	24.19
Bra040450.1-P	Field mustard	nucleus	11.52	21.9
Bra027467.1-P	Field mustard	nucleus	17.61	19.76
TraesCS3B01G272400.4	Wheat	nucleus	22.61	19.7
TraesCS3A01G246900.3	Wheat	nucleus	22.39	19.54
TraesCS3D01G244600.1	Wheat	nucleus	22.39	19.51
Os01t0667700-02	Rice	nucleus	22.17	19.47
HORVU3Hr1G061010.4	Barley	nucleus	21.96	19.2
HORVU1Hr1G087900.1	Barley	cytosol	20.87	18.46
EES03404	Sorghum	nucleus	20.87	18.43
Bra022580.1-P	Field mustard	cytosol	7.17	18.33
Zm00001d011541_P004	Maize	nucleus	20.87	18.11
Os05t0564300-01	Rice	nucleus	19.57	18.0
KXG22536	Sorghum	nucleus	19.78	17.91
Zm00001d009571_P002	Maize	nucleus	19.57	17.58
TraesCS1D01G405800.9	Wheat	cytosol	20.0	17.56
TraesCS1A01G398300.8	Wheat	cytosol	20.43	17.44
Bra024007.1-P	Field mustard	nucleus	17.61	17.34
Bra023101.1-P	Field mustard	nucleus	20.0	17.26
Bra003830.1-P	Field mustard	nucleus, plastid	12.61	17.11
TraesCS1B01G426200.9	Wheat	cytosol	20.22	16.97
Solyc07g062720.1.1	Tomato	nucleus	28.48	16.9
Bra015967.1-P	Field mustard	nucleus	13.04	16.81
Bra017205.1-P	Field mustard	nucleus	19.57	16.76
PGSC0003DMT400032385	Potato	nucleus	29.57	16.75
Bra016574.1-P	Field mustard	nucleus	12.61	16.2
Bra006070.1-P	Field mustard	nucleus	17.17	15.96
Bra033652.1-P	Field mustard	nucleus	19.78	14.8
Zm00001d039015_P002	Maize	cytosol	13.04	14.67
Bra009015.1-P	Field mustard	plastid	16.74	14.45
Bra015221.1-P	Field mustard	nucleus	18.48	14.24
Bra039842.1-P	Field mustard	nucleus	18.26	14.07
Bra022579.1-P	Field mustard	cytosol	3.91	13.64
Bra022466.1-P	Field mustard	nucleus	9.57	13.58
Bra038240.1-P	Field mustard	nucleus	9.78	13.51
Bra014043.1-P	Field mustard	nucleus	16.52	13.19
Bra009800.1-P	Field mustard	nucleus	9.35	10.49
Bra028293.1-P	Field mustard	nucleus	5.43	10.46
Bra028576.1-P	Field mustard	cytosol	5.43	8.83
Bra036336.1-P	Field mustard	nucleus	7.17	6.56

Protein Annotations

EnsemblPlants:Bra039659.1	EnsemblPlants:Bra039659.1-P	EnsemblPlantsGene:Bra039659	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253E7FB	UniProt:M4FEY7	MapMan:35.1

Description

AT1G53190 (E=2e-176) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:-:672854..674834

Molecular Weight (calculated)

50776.8 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.625

Length

460 amino acids

Sequence
(BLAST)

001: MGQRNRSVDL EMEQQQHHQT QASLQPGPCL LLGSFPPPAM VANVPNSLQD NSAMFYGLPQ YHHHHQPPPT NYYAPYVAFQ APPSQLPSSS SHEMNAHFMD
101: HTPGAYKRKN AEGIPVNPHL AAPFNNAPET VAPFGGARSR PGALTMNPVL PPPPPHAPNV FIQGNYAGHH PFPPPGSIWY DQHLGRPDGS PSFWPHSPYM
201: QGSNIVAGSL ESSSRNPAPF IFPSPLNPRD HYYSHHHLPA PPPVQGVRGQ SATLYPPMAS SPSYRVPFGN FAPQNTSNLG PEMGPVQPTG FRIYQHPPPL
301: AALRQHRGGV PRLRVMPDDE AAILEFGDFL GGSGNNHVDH HRDMRLDIEE MSYEELLALS ERIGTVNTGL PEEDVKNHLK TRTCSVINVA EESSSSSPQT
401: KDRETEPCTI CQESFKNEEK IATLDCGHEY HAECLEKWLI VKNVCPICKS EALVMEKRKV

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.