Factsheet for PGSC0003DMT400039631

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014070.1.1	Tomato	nucleus	96.83	97.01
PGSC0003DMT400054921	Potato	nucleus	60.26	62.24
PGSC0003DMT400079217	Potato	cytosol	10.45	56.57
VIT_19s0014g01850.t01	Wine grape	nucleus	47.76	47.58
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	32.28	44.02
VIT_03s0097g00680.t01	Wine grape	nucleus	33.21	42.28
VIT_03s0088g01090.t01	Wine grape	nucleus	35.63	41.79
KRH26195	Soybean	nucleus	33.96	39.74
KRH55161	Soybean	nucleus	33.77	39.52
KRH22017	Soybean	nucleus	37.31	37.88
KRH30071	Soybean	cytosol	23.32	36.34
PGSC0003DMT400032385	Potato	nucleus	50.0	33.0
AT1G53190.1	Thale cress	nucleus	29.48	31.98
CDY26006	Canola	nucleus	27.43	31.82
Bra039659.1-P	Field mustard	nucleus	27.05	31.52
CDY24110	Canola	nucleus	27.05	31.52
KRH55090	Soybean	nucleus	21.27	30.65
KRH55165	Soybean	nucleus	17.72	30.55
CDY25871	Canola	nucleus	26.49	29.71
Bra038109.1-P	Field mustard	nucleus	26.49	29.58
CDY55839	Canola	nucleus	26.49	29.04
AT3G15070.1	Thale cress	nucleus	26.12	28.81
Bra027282.1-P	Field mustard	nucleus	23.88	28.76
CDY68521	Canola	nucleus	23.51	28.57
CDX97629	Canola	nucleus	23.13	28.12
Bra001582.1-P	Field mustard	nucleus	22.57	27.69
PGSC0003DMT400020398	Potato	nucleus	9.14	27.68
CDX75805	Canola	cytosol	22.57	27.31
CDX82450	Canola	nucleus	22.57	27.01
EES03404	Sorghum	nucleus	23.69	24.38
PGSC0003DMT400004449	Potato	nucleus	24.07	23.8
Os01t0667700-02	Rice	nucleus	22.76	23.28
Zm00001d011541_P004	Maize	nucleus	22.95	23.21
PGSC0003DMT400017553	Potato	nucleus	10.45	23.05
PGSC0003DMT400082375	Potato	nucleus	10.45	22.76
KXG22536	Sorghum	nucleus	21.46	22.64
Os05t0564300-01	Rice	nucleus	21.08	22.6
Zm00001d009571_P002	Maize	nucleus	21.46	22.46
PGSC0003DMT400078539	Potato	plastid	10.26	22.09
TraesCS3A01G246900.3	Wheat	nucleus	21.46	21.82
TraesCS3D01G244600.1	Wheat	nucleus	21.46	21.78
HORVU3Hr1G061010.4	Barley	nucleus	21.27	21.67
TraesCS3B01G272400.4	Wheat	nucleus	21.27	21.59
HORVU1Hr1G087900.1	Barley	cytosol	19.96	20.58
TraesCS1A01G398300.8	Wheat	cytosol	19.78	19.67
TraesCS1D01G405800.9	Wheat	cytosol	19.22	19.66
TraesCS1B01G426200.9	Wheat	cytosol	19.78	19.34
PGSC0003DMT400037132	Potato	nucleus	8.21	18.41
PGSC0003DMT400014732	Potato	nucleus	12.87	17.78
PGSC0003DMT400039849	Potato	nucleus	22.2	17.17
Zm00001d039015_P002	Maize	cytosol	13.06	17.11
PGSC0003DMT400067670	Potato	nucleus	14.37	14.58
PGSC0003DMT400095772	Potato	cytosol	5.04	14.52
PGSC0003DMT400020528	Potato	nucleus	18.47	14.37
PGSC0003DMT400075959	Potato	nucleus	13.81	13.58
PGSC0003DMT400066252	Potato	nucleus	17.72	13.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400039631	EnsemblPlantsGene:PGSC0003DMG401015329	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089	PGSC:PGSC0003DMG401015329
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294FA9F	UniProt:M1B8J6	MapMan:35.1

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG401015329]

Coordinates

chr12:-:397692..403630

Molecular Weight (calculated)

58664.7 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.510

Length

536 amino acids

Sequence
(BLAST)

001: MEADQQGQEF FHSAPCMFYG SIATLPQPTV HAVVPAPVNA GNIYLHHVSD HQEGTLTYGL TQFNGIQHQH PASNPDLAIS ASSNHYNPYM AVPSASGDFP
101: IPVNHGPHDR LHTSSHNILG MNSDYGRNNH YMDDVRGSFK RKNAEGIPAN LQYHHALAGS SSSVAPMIAR AHESDVSMDA ASFTPPDYGG NSSSYIEDGA
201: LRSMSNRSGA SGPENIARHN HNHLFQGNYI SQTHQLPGNP WLDLQFNSNG SETQPWAWNQ AAPLPYVPGG IGGCVDAGNM GLRGYHMTSS NGGLTSFLHP
301: PIPQGHPGLH HLPPNIQGMR GQPITFPPQM TASSSHRHLP NNSSNITTNL MQGVVEAGPR YMPSLPNGFG LYRPHRRAIV LERNTRHQNL PNMRVLPEDG
401: VAMLDVSGYN EVNNPIDQHR DMRLDVDHMS YEELLALGEQ IGNVTTGLSD EIIVNRLKTR SFSPPVIPCT LETAACLDHE ADFCVICQTD YNKQETIGTL
501: DCGHEYHAEC VKKWLVVKNT CPICKSTGLS VERKDL

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.