Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G272400.4 | Wheat | nucleus | 93.92 | 93.56 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 93.73 | 93.37 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 92.97 | 92.79 |
| Os01t0667700-02 | Rice | nucleus | 75.86 | 76.14 |
| EES03404 | Sorghum | nucleus | 72.05 | 72.74 |
| Zm00001d011541_P004 | Maize | nucleus | 70.34 | 69.81 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 42.4 | 42.88 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 5.32 | 30.43 |
| CDY68521 | Canola | nucleus | 18.44 | 22.0 |
| CDY24110 | Canola | nucleus | 19.2 | 21.96 |
| Bra039659.1-P | Field mustard | nucleus | 19.2 | 21.96 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 15.97 | 21.37 |
| CDX97629 | Canola | nucleus | 17.87 | 21.32 |
| PGSC0003DMT400039631 | Potato | nucleus | 21.67 | 21.27 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 21.67 | 21.19 |
| Bra027282.1-P | Field mustard | nucleus | 17.87 | 21.12 |
| Solyc12g014070.1.1 | Tomato | nucleus | 21.48 | 21.12 |
| CDY26006 | Canola | nucleus | 18.44 | 21.0 |
| CDX75805 | Canola | cytosol | 17.68 | 20.99 |
| KRH30071 | Soybean | cytosol | 13.69 | 20.93 |
| CDX82450 | Canola | nucleus | 17.68 | 20.76 |
| AT1G53190.1 | Thale cress | nucleus | 19.39 | 20.65 |
| Bra001582.1-P | Field mustard | nucleus | 17.11 | 20.59 |
| KRH55165 | Soybean | nucleus | 12.17 | 20.58 |
| KRH55161 | Soybean | nucleus | 17.87 | 20.52 |
| AT3G15070.1 | Thale cress | nucleus | 18.82 | 20.37 |
| KRH26195 | Soybean | nucleus | 17.68 | 20.31 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 16.16 | 20.19 |
| CDY25871 | Canola | nucleus | 18.06 | 19.87 |
| CDY55839 | Canola | nucleus | 18.44 | 19.84 |
| Bra038109.1-P | Field mustard | nucleus | 18.06 | 19.79 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 6.46 | 19.77 |
| HORVU3Hr1G064370.1 | Barley | plastid | 14.26 | 19.48 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 16.92 | 19.47 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 13.69 | 19.2 |
| KRH22017 | Soybean | nucleus | 19.01 | 18.94 |
| Solyc10g007140.2.1 | Tomato | nucleus | 18.44 | 18.69 |
| PGSC0003DMT400054921 | Potato | nucleus | 18.25 | 18.5 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 9.32 | 18.49 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 8.37 | 18.49 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 18.82 | 18.44 |
| KRH55090 | Soybean | nucleus | 12.93 | 18.28 |
| HORVU1Hr1G082970.1 | Barley | plastid | 11.98 | 16.71 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 18.25 | 16.61 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 18.44 | 16.47 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 10.65 | 15.91 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 19.58 | 15.75 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 9.51 | 14.45 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 8.17 | 14.38 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 18.63 | 13.88 |
| Solyc07g062720.1.1 | Tomato | nucleus | 18.44 | 12.52 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 13.88 | 12.46 |
| PGSC0003DMT400032385 | Potato | nucleus | 19.01 | 12.32 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 15.59 | 11.8 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 5.7 | 6.99 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G061010.4 | EnsemblPlantsGene:HORVU3Hr1G061010 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF67 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B48300A | UniProt:A0A287L9Q6 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr3H:-:464907325..464916834
Molecular Weight (calculated)
57377.4 Da
IEP (calculated)
6.642
GRAVY (calculated)
-0.529
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRMVCAPQ VIDLESERGH PHVHSESLIH NGNDLSDQGG QYTVRVVGNA TNAGLSDTQG YYNMSMNHPH QPVHNSPPNL GVDSGFVFPS SMYNPCMSTS
101: MNRYVSHAQS FGLPLNQVVL GSIDGSTRNE NVSETARGFI KRKNATAGSC HVNGFASSGS SSHTSQNPTH RPWDPSFESN VFPNVTPFNP SEYHNHSTWP
201: SVEGSSITGT NGFNSMAAHP ESAQHGNYTF QSSHASQCFQ PASTTWVSQA ATGIAEGVPQ WTYINAISSV PAGRFAHSGV TEIVNGGFHE YQNGPSTISQ
301: GHLPYFHQHA VHSMQAHNPL DHTQVQVPYQ QGHNNGVLHT GVNHSGNRFH LGPRTPGLFS NSERSFGPPQ HPFLVNPVNH RNIRILPPLQ RGAIMDFSGL
401: YEGSNVVDEH RDMRLDIDSM TYEELLALEE HIGDVNTGLA KSHIVDKLKT SLYAPGATCM SNQSSESSTE SEACIICQEE YHPEDCIGVL DCGHRYHAEC
501: VKQWLTVKNL CPVCKTTALS AGRRSG
101: MNRYVSHAQS FGLPLNQVVL GSIDGSTRNE NVSETARGFI KRKNATAGSC HVNGFASSGS SSHTSQNPTH RPWDPSFESN VFPNVTPFNP SEYHNHSTWP
201: SVEGSSITGT NGFNSMAAHP ESAQHGNYTF QSSHASQCFQ PASTTWVSQA ATGIAEGVPQ WTYINAISSV PAGRFAHSGV TEIVNGGFHE YQNGPSTISQ
301: GHLPYFHQHA VHSMQAHNPL DHTQVQVPYQ QGHNNGVLHT GVNHSGNRFH LGPRTPGLFS NSERSFGPPQ HPFLVNPVNH RNIRILPPLQ RGAIMDFSGL
401: YEGSNVVDEH RDMRLDIDSM TYEELLALEE HIGDVNTGLA KSHIVDKLKT SLYAPGATCM SNQSSESSTE SEACIICQEE YHPEDCIGVL DCGHRYHAEC
501: VKQWLTVKNL CPVCKTTALS AGRRSG
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Arabidopsis Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.