Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038109.1-P | Field mustard | nucleus | 95.3 | 97.08 |
| CDY25871 | Canola | nucleus | 94.48 | 96.65 |
| CDY26006 | Canola | nucleus | 77.3 | 81.82 |
| CDY24110 | Canola | nucleus | 74.64 | 79.35 |
| AT1G53190.1 | Thale cress | nucleus | 76.69 | 75.91 |
| CDX75805 | Canola | cytosol | 42.33 | 46.73 |
| CDX82450 | Canola | nucleus | 42.33 | 46.21 |
| CDX97629 | Canola | nucleus | 41.51 | 46.03 |
| CDY68521 | Canola | nucleus | 40.9 | 45.35 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 37.42 | 34.01 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 23.72 | 29.52 |
| KRH30071 | Soybean | cytosol | 20.25 | 28.78 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 24.34 | 28.27 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 26.38 | 28.23 |
| KRH55161 | Soybean | nucleus | 26.38 | 28.17 |
| KRH22017 | Soybean | nucleus | 30.27 | 28.03 |
| CDY13429 | Canola | cytosol | 14.52 | 27.52 |
| KRH26195 | Soybean | nucleus | 25.56 | 27.29 |
| Solyc12g014070.1.1 | Tomato | nucleus | 29.45 | 26.92 |
| PGSC0003DMT400054921 | Potato | nucleus | 28.43 | 26.78 |
| Solyc10g007140.2.1 | Tomato | nucleus | 28.43 | 26.78 |
| PGSC0003DMT400039631 | Potato | nucleus | 29.04 | 26.49 |
| KRH55165 | Soybean | nucleus | 16.16 | 25.4 |
| KRH55090 | Soybean | nucleus | 18.4 | 24.19 |
| CDX77848 | Canola | nucleus | 9.0 | 20.75 |
| CDY53710 | Canola | nucleus | 10.22 | 20.66 |
| CDY67192 | Canola | nucleus | 9.0 | 20.66 |
| CDX93901 | Canola | nucleus | 9.82 | 20.0 |
| CDY32973 | Canola | nucleus | 16.77 | 20.0 |
| Os01t0667700-02 | Rice | nucleus | 21.27 | 19.85 |
| CDY43590 | Canola | nucleus | 16.77 | 19.48 |
| CDX97032 | Canola | plastid | 13.29 | 19.4 |
| CDY63645 | Canola | nucleus | 18.2 | 19.26 |
| CDY71882 | Canola | plastid | 13.5 | 18.86 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 20.25 | 18.75 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 20.25 | 18.75 |
| CDY13433 | Canola | nucleus | 17.79 | 18.67 |
| Os05t0564300-01 | Rice | nucleus | 19.02 | 18.6 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 20.04 | 18.6 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 19.63 | 18.46 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 19.84 | 18.44 |
| CDX79718 | Canola | nucleus | 19.84 | 18.27 |
| CDX91624 | Canola | nucleus | 8.18 | 18.18 |
| CDY27083 | Canola | nucleus | 7.98 | 17.81 |
| CDY55435 | Canola | nucleus | 19.22 | 17.8 |
| KXG22536 | Sorghum | nucleus | 18.4 | 17.72 |
| EES03404 | Sorghum | nucleus | 18.81 | 17.66 |
| Zm00001d009571_P002 | Maize | nucleus | 18.4 | 17.58 |
| Zm00001d011541_P004 | Maize | nucleus | 19.02 | 17.55 |
| CDY68424 | Canola | nucleus | 19.22 | 17.5 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 19.22 | 17.44 |
| CDY46757 | Canola | nucleus | 18.81 | 17.26 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 18.4 | 17.18 |
| CDY11092 | Canola | cytosol, plastid | 12.07 | 16.95 |
| CDY00512 | Canola | nucleus | 9.41 | 16.85 |
| CDY31919 | Canola | nucleus | 9.41 | 16.85 |
| CDY60141 | Canola | plastid | 12.27 | 16.81 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 18.81 | 16.79 |
| CDX91625 | Canola | cytosol | 7.77 | 16.59 |
| CDY17114 | Canola | nucleus | 18.0 | 16.57 |
| Solyc07g062720.1.1 | Tomato | nucleus | 26.18 | 16.52 |
| PGSC0003DMT400032385 | Potato | nucleus | 27.2 | 16.38 |
| CDX73013 | Canola | plastid | 11.86 | 16.34 |
| CDX85750 | Canola | nucleus | 12.88 | 16.32 |
| CDX68213 | Canola | nucleus, plastid | 11.45 | 16.05 |
| CDY27082 | Canola | cytosol | 7.77 | 15.97 |
| CDY68658 | Canola | nucleus | 15.13 | 15.78 |
| CDY22376 | Canola | nucleus | 19.84 | 15.77 |
| CDX83878 | Canola | nucleus | 11.45 | 15.69 |
| CDY40109 | Canola | nucleus | 5.93 | 15.59 |
| CDX71531 | Canola | nucleus | 20.04 | 15.38 |
| CDX88140 | Canola | nucleus | 15.13 | 15.35 |
| CDY24595 | Canola | nucleus | 9.82 | 15.24 |
| CDX70363 | Canola | nucleus | 15.13 | 15.23 |
| CDX96741 | Canola | nucleus | 11.25 | 15.11 |
| CDX95473 | Canola | nucleus | 14.31 | 15.09 |
| CDY17061 | Canola | nucleus | 18.61 | 15.02 |
| CDX78393 | Canola | nucleus | 15.13 | 14.98 |
| CDY43220 | Canola | nucleus | 18.61 | 14.94 |
| CDX97044 | Canola | nucleus | 15.34 | 14.71 |
| CDY33429 | Canola | nucleus | 9.82 | 14.55 |
| Zm00001d039015_P002 | Maize | cytosol | 12.07 | 14.43 |
| CDY25357 | Canola | nucleus | 9.41 | 14.38 |
| CDY62314 | Canola | nucleus | 17.38 | 14.36 |
| CDY37230 | Canola | nucleus | 17.18 | 14.26 |
| CDX69813 | Canola | mitochondrion | 15.54 | 14.26 |
| CDY42218 | Canola | nucleus | 9.61 | 14.07 |
| CDY47948 | Canola | nucleus | 7.77 | 7.55 |
| CDY69560 | Canola | nucleus | 7.36 | 7.07 |
| CDY36635 | Canola | nucleus | 7.36 | 6.04 |
Protein Annotations
| EnsemblPlants:CDY55839 | EnsemblPlantsGene:GSBRNA2T00017385001 | Gene3D:3.30.40.10 | GO:A0A078J1M8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF48 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY55839 | ProteinID:CDY55839.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE5078 |
| UniProt:A0A078J1M8 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng29280DBnaCnng29280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1M8]
Coordinates
chrLK033433:+:55..3533
Molecular Weight (calculated)
54065.2 Da
IEP (calculated)
6.564
GRAVY (calculated)
-0.755
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQRNRTVDL EMEQQQQHHS QSSLQPGPCI LLSSFPPQQQ QQPDNNNNNL PAMAASFPNL EARSLQDPTS YDMFYGLPQY HHHHQLLQPA PPPNYYVPYM
101: AFQGPSSSSQ GVVGVSSDQF MDHTRGAYKR KNAEGIPVMN HQSLSTLAAP FNNTPETIAP FGGPRSRPMN PVLPPPPPPP PHPHHAPNSF IQGSYPGHHP
201: FPPPGSIWYE QHHGRPDGSP SFWPHPPYMH AGSIESSGRN PTAFMYPPRD HYYHHPPPPP PPHVQGVRGQ SATLYPPMAS SSPSYGFPPG NFAPPQNTIN
301: RGGPSGSEMG PVQPTGFRIY QRDDSVPLAA LRQHRGGVPR FRMMPDDEVA ILEFGDFLGG GSGNNHIDHH RDMRLDIEEM SYEELLALSE RIGTVNTGLP
401: EEDVKNHLKT RTCSVINLAA ESSSSSSKTE DRETEPCTIC QESFKNEEKI ATLDCGHEYH AGCLEKWLVV KNVCPICKAE ALVTEKTTV
101: AFQGPSSSSQ GVVGVSSDQF MDHTRGAYKR KNAEGIPVMN HQSLSTLAAP FNNTPETIAP FGGPRSRPMN PVLPPPPPPP PHPHHAPNSF IQGSYPGHHP
201: FPPPGSIWYE QHHGRPDGSP SFWPHPPYMH AGSIESSGRN PTAFMYPPRD HYYHHPPPPP PPHVQGVRGQ SATLYPPMAS SSPSYGFPPG NFAPPQNTIN
301: RGGPSGSEMG PVQPTGFRIY QRDDSVPLAA LRQHRGGVPR FRMMPDDEVA ILEFGDFLGG GSGNNHIDHH RDMRLDIEEM SYEELLALSE RIGTVNTGLP
401: EEDVKNHLKT RTCSVINLAA ESSSSSSKTE DRETEPCTIC QESFKNEEKI ATLDCGHEYH AGCLEKWLVV KNVCPICKAE ALVTEKTTV
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Arabidopsis Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.