Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71882 | Canola | plastid | 75.43 | 100.0 |
| CDX97032 | Canola | plastid | 72.2 | 100.0 |
| CDX97044 | Canola | nucleus | 92.24 | 83.92 |
| CDX69813 | Canola | mitochondrion | 91.59 | 79.74 |
| Bra009015.1-P | Field mustard | plastid | 90.73 | 78.99 |
| CDX70363 | Canola | nucleus | 77.16 | 73.66 |
| CDX78393 | Canola | nucleus | 77.37 | 72.67 |
| CDX85750 | Canola | nucleus | 57.11 | 68.65 |
| AT5G10650.2 | Thale cress | nucleus | 76.51 | 67.62 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.99 | 55.43 |
| CDY40109 | Canola | nucleus | 20.69 | 51.61 |
| Zm00001d019616_P001 | Maize | cytosol | 14.22 | 51.16 |
| Zm00001d015453_P001 | Maize | cytosol | 14.22 | 51.16 |
| Zm00001d013776_P001 | Maize | cytosol | 14.22 | 51.16 |
| CDX88140 | Canola | nucleus | 51.51 | 49.59 |
| CDY68658 | Canola | nucleus | 49.78 | 49.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.2 | 45.78 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 48.06 | 40.55 |
| KRH04957 | Soybean | nucleus | 44.18 | 38.53 |
| KRH52597 | Soybean | nucleus | 42.67 | 36.6 |
| PGSC0003DMT400067670 | Potato | nucleus | 40.52 | 35.61 |
| KRH16134 | Soybean | nucleus | 42.24 | 35.32 |
| PGSC0003DMT400075959 | Potato | nucleus | 40.52 | 34.5 |
| Solyc12g096420.1.1 | Tomato | nucleus | 40.95 | 34.48 |
| Solyc08g006460.2.1 | Tomato | nucleus | 39.22 | 34.27 |
| CDY13429 | Canola | cytosol | 18.97 | 34.11 |
| KRH61936 | Soybean | nucleus | 38.79 | 32.32 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 34.27 | 28.19 |
| Os06t0695600-01 | Rice | nucleus | 35.13 | 28.15 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 35.34 | 28.13 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 30.82 | 27.82 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 34.91 | 26.87 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 33.84 | 26.79 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.19 | 26.64 |
| KXG20741 | Sorghum | nucleus | 33.84 | 26.61 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 32.76 | 26.53 |
| Zm00001d014609_P002 | Maize | nucleus | 32.97 | 26.15 |
| Os08t0241400-00 | Rice | nucleus | 20.91 | 25.73 |
| EES12797 | Sorghum | nucleus | 20.47 | 25.4 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 20.47 | 25.33 |
| Zm00001d015289_P001 | Maize | nucleus | 30.82 | 25.27 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 20.26 | 25.2 |
| Zm00001d024406_P002 | Maize | nucleus | 19.4 | 25.14 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 19.83 | 24.93 |
| OQU80147 | Sorghum | nucleus | 19.18 | 24.86 |
| EES04530 | Sorghum | nucleus | 27.37 | 24.52 |
| Os02t0150700-01 | Rice | extracellular | 33.84 | 24.49 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 19.61 | 24.46 |
| Zm00001d026248_P001 | Maize | nucleus | 19.18 | 23.42 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 28.66 | 22.89 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 34.27 | 22.88 |
| CDX73013 | Canola | plastid | 17.46 | 22.82 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 19.4 | 22.67 |
| CDY60141 | Canola | plastid | 17.03 | 22.13 |
| CDY63645 | Canola | nucleus | 21.98 | 22.08 |
| CDY11092 | Canola | cytosol, plastid | 16.38 | 21.84 |
| CDX68213 | Canola | nucleus, plastid | 16.38 | 21.78 |
| CDY67192 | Canola | nucleus | 9.91 | 21.6 |
| Os04t0603200-01 | Rice | nucleus | 15.3 | 21.58 |
| CDX83878 | Canola | nucleus | 16.59 | 21.57 |
| CDY13433 | Canola | nucleus | 21.55 | 21.46 |
| CDX96741 | Canola | nucleus | 16.81 | 21.43 |
| CDX77848 | Canola | nucleus | 9.7 | 21.23 |
| CDX93901 | Canola | nucleus | 10.13 | 19.58 |
| CDY53710 | Canola | nucleus | 10.13 | 19.42 |
| CDY27083 | Canola | nucleus | 8.41 | 17.81 |
| CDX91624 | Canola | nucleus | 8.41 | 17.73 |
| CDY43590 | Canola | nucleus | 15.52 | 17.1 |
| CDY32973 | Canola | nucleus | 15.09 | 17.07 |
| CDY68521 | Canola | nucleus | 15.73 | 16.55 |
| CDY31919 | Canola | nucleus | 9.7 | 16.48 |
| CDY00512 | Canola | nucleus | 9.7 | 16.48 |
| CDY26006 | Canola | nucleus | 16.38 | 16.45 |
| CDX97629 | Canola | nucleus | 15.3 | 16.1 |
| CDY24110 | Canola | nucleus | 15.95 | 16.09 |
| CDX75805 | Canola | cytosol | 15.3 | 16.03 |
| CDY24595 | Canola | nucleus | 10.56 | 15.56 |
| CDX79718 | Canola | nucleus | 17.46 | 15.25 |
| CDX82450 | Canola | nucleus | 14.66 | 15.18 |
| CDY33429 | Canola | nucleus | 10.78 | 15.15 |
| CDY62314 | Canola | nucleus | 19.18 | 15.03 |
| CDY46757 | Canola | nucleus | 17.24 | 15.01 |
| CDY25357 | Canola | nucleus | 10.34 | 15.0 |
| CDY42218 | Canola | nucleus | 10.78 | 14.97 |
| CDY37230 | Canola | nucleus | 18.97 | 14.94 |
| CDY25871 | Canola | nucleus | 15.3 | 14.85 |
| CDY17114 | Canola | nucleus | 16.81 | 14.69 |
| CDY55435 | Canola | nucleus | 16.59 | 14.58 |
| CDY68424 | Canola | nucleus | 16.59 | 14.34 |
| CDY55839 | Canola | nucleus | 15.09 | 14.31 |
| CDY22376 | Canola | nucleus | 18.32 | 13.82 |
| CDX91625 | Canola | cytosol | 6.68 | 13.54 |
| CDY17061 | Canola | nucleus | 16.59 | 12.71 |
| CDY27082 | Canola | cytosol | 6.47 | 12.61 |
| CDX71531 | Canola | nucleus | 17.24 | 12.56 |
| CDY43220 | Canola | nucleus | 16.38 | 12.48 |
| CDY47948 | Canola | nucleus | 7.33 | 6.76 |
| CDY69560 | Canola | nucleus | 6.03 | 5.5 |
| CDY36635 | Canola | nucleus | 6.25 | 4.87 |
Protein Annotations
| EnsemblPlants:CDX95473 | EnsemblPlantsGene:GSBRNA2T00101249001 | Gene3D:3.30.40.10 | GO:A0A078E7X3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 |
| PFscan:PS50089 | ProteinID:CDX95473 | ProteinID:CDX95473.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE5028 | MapMan:35.1 | : | : | : | : |
Description
BnaC01g33650D
Coordinates
chrLK031889:-:453439..455657
Molecular Weight (calculated)
49771.3 Da
IEP (calculated)
9.402
GRAVY (calculated)
-0.625
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLPRKATGP GSRIGPTVDN TKVGRPGKAI VGSSSRTPGG FGYLRKPAIG TTGRRQPSSN VDTCSSETSS SLGHPAAVKP ILPRLKTKRS AISVQSQNTV
101: SREVVGISSS RGTIRSSHQK PDLRTRDTLM PPSVSSSSGG DHTLRGGLSR NGLRNLRCNS VSDVLPTKSS SGTKVSVTKK KNSDGESSSS SQGSKSSVSV
201: MKGRNQSSSH GNGVTVSDNR RNRMVPTIRD NSVVSSSGRR SGRLGVVASP ATSRQTPQPA TPINPNHSLS VTPSNSHSST GRLSSMIPGS PSEAHPSSSL
301: VDRDGLSRYN MNGIAEVLLA LERIEHDHEL TYEQLASLET NLFSSGMIRF HDQHSDMRID IDNMSYEELL ALGDEIGTVS TALSEEALSR SLKKSIYQET
401: DETGAISLDK DDDIKCSICQ EEYVDGDEVG TMPCEHMYHV SCVQQWLRMK NWCPICKTSA EEKS
101: SREVVGISSS RGTIRSSHQK PDLRTRDTLM PPSVSSSSGG DHTLRGGLSR NGLRNLRCNS VSDVLPTKSS SGTKVSVTKK KNSDGESSSS SQGSKSSVSV
201: MKGRNQSSSH GNGVTVSDNR RNRMVPTIRD NSVVSSSGRR SGRLGVVASP ATSRQTPQPA TPINPNHSLS VTPSNSHSST GRLSSMIPGS PSEAHPSSSL
301: VDRDGLSRYN MNGIAEVLLA LERIEHDHEL TYEQLASLET NLFSSGMIRF HDQHSDMRID IDNMSYEELL ALGDEIGTVS TALSEEALSR SLKKSIYQET
401: DETGAISLDK DDDIKCSICQ EEYVDGDEVG TMPCEHMYHV SCVQQWLRMK NWCPICKTSA EEKS
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.