Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 90.46 | 92.06 |
| TraesCS5B01G325800.1 | Wheat | mitochondrion | 92.2 | 84.39 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 87.86 | 82.16 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 27.46 | 80.51 |
| EER97094 | Sorghum | nucleus | 71.68 | 76.54 |
| Os09t0535100-01 | Rice | nucleus | 71.68 | 76.31 |
| TraesCS5B01G279200.1 | Wheat | cytosol | 26.59 | 75.41 |
| Zm00001d006226_P001 | Maize | peroxisome | 66.47 | 72.33 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 66.47 | 71.43 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 55.78 | 64.55 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 51.16 | 59.8 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 48.84 | 57.88 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 43.93 | 49.35 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 41.62 | 47.84 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 41.62 | 46.91 |
| CDY25357 | Canola | nucleus | 42.49 | 45.94 |
| AT3G19910.1 | Thale cress | nucleus | 45.09 | 45.88 |
| CDY24595 | Canola | nucleus | 41.62 | 45.71 |
| Bra022466.1-P | Field mustard | nucleus | 42.49 | 45.37 |
| KRG90628 | Soybean | nucleus | 43.64 | 45.07 |
| CDY42218 | Canola | nucleus | 42.77 | 44.31 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 28.32 | 44.14 |
| Bra038240.1-P | Field mustard | nucleus | 42.2 | 43.84 |
| CDY33429 | Canola | nucleus | 41.62 | 43.64 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 43.06 | 41.97 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 16.18 | 32.56 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 21.1 | 27.55 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 17.63 | 25.63 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 23.7 | 23.3 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 4.34 | 16.3 |
| HORVU1Hr1G082970.1 | Barley | plastid | 14.45 | 13.26 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 13.87 | 12.8 |
| HORVU3Hr1G064370.1 | Barley | plastid | 14.16 | 12.73 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 16.18 | 9.56 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 14.45 | 9.51 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 14.74 | 9.5 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 15.61 | 9.17 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 13.01 | 8.65 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 14.45 | 8.65 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 16.76 | 8.35 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 15.61 | 8.26 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 15.9 | 7.79 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 4.62 | 3.73 |
Protein Annotations
| EMBL:AK357711 | EnsemblPlants:HORVU5Hr1G082790.2 | EnsemblPlantsGene:HORVU5Hr1G082790 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF172 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002005119 | UniProt:F2D1F4 | MapMan:35.1 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1F4]
Coordinates
chrchr5H:-:568393301..568400049
Molecular Weight (calculated)
37169.9 Da
IEP (calculated)
3.661
GRAVY (calculated)
-0.875
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSKGSDGG GERPGADHNP SPDQPPPAAA PGREDDGAAA AAVAAAAAED EDEARRPFTA LSQVDADLAL ARVLQEQERA YMMLRMNGVG GGGGGDGSDY
101: GSSEAGSYEY DEDAEVDYEE ELENHLRVHH HDHPGGGEAD GDDDLEAEAD GQGEGEGDGE DQGDDEGSEE SEYEEEGFDE DDDVELDLDP AEYEDDEAYA
201: RALQDAEERE VAARLMALAG ISDWRAVEHV EDHINDAQDS WQEVDPDEYS YEELVALGDV VGTESRGLSA DTLASLPSVT YKTKDMQDGN TEQCVICRVE
301: FEEGESLVAL PCNHSYHPDC INQWLQINKV CPMCSAEVST SANKQA
101: GSSEAGSYEY DEDAEVDYEE ELENHLRVHH HDHPGGGEAD GDDDLEAEAD GQGEGEGDGE DQGDDEGSEE SEYEEEGFDE DDDVELDLDP AEYEDDEAYA
201: RALQDAEERE VAARLMALAG ISDWRAVEHV EDHINDAQDS WQEVDPDEYS YEELVALGDV VGTESRGLSA DTLASLPSVT YKTKDMQDGN TEQCVICRVE
301: FEEGESLVAL PCNHSYHPDC INQWLQINKV CPMCSAEVST SANKQA
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.