CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024556.1-P	Field mustard	cytosol	96.08	100.0
CDY04750	Canola	cytosol	97.39	97.39
AT1G22990.1	Thale cress	cytosol	94.77	95.39
CDY12499	Canola	cytosol	92.16	92.16
CDY25762	Canola	cytosol	92.16	92.16
CDX96299	Canola	cytosol	74.51	76.0
CDX72773	Canola	cytosol	74.51	76.0
CDX75144	Canola	cytosol	47.71	57.94
CDY38431	Canola	cytosol	53.59	55.03
CDX85452	Canola	cytosol	53.59	55.03
CDY55938	Canola	cytosol	53.59	55.03
CDY16919	Canola	cytosol	52.94	54.36
CDY41999	Canola	cytosol	55.56	53.8
CDX86196	Canola	cytosol	55.56	53.8
CDY42647	Canola	cytosol	55.56	53.8
CDY36193	Canola	cytosol	51.63	52.67
CDY65011	Canola	cytosol	52.29	52.29
CDX72748	Canola	cytosol	51.63	51.63
CDX90282	Canola	cytosol	50.98	50.98
CDX88005	Canola	cytosol	47.71	50.34
CDY07874	Canola	cytosol	47.71	50.34
CDY12089	Canola	cytosol	50.33	50.33
CDX76309	Canola	cytosol	46.41	46.1
CDY52653	Canola	cytosol	45.75	45.75
CDY17504	Canola	cytosol	45.75	45.45
CDX69108	Canola	cytosol	45.1	45.1
CDY05886	Canola	cytosol	33.99	37.68
CDY08096	Canola	cytosol	33.99	37.68
CDY06206	Canola	cytosol	32.03	32.45
CDY27183	Canola	cytosol	31.37	30.38
CDY47384	Canola	cytosol, extracellular	31.37	30.19
CDY57455	Canola	cytosol	27.45	29.79
CDX94648	Canola	cytosol	27.45	29.79
CDX72102	Canola	cytosol	30.72	29.75
CDX99542	Canola	plastid	35.29	29.67
CDX86861	Canola	plastid	35.29	29.67
CDY13354	Canola	cytosol	33.99	29.21
CDX67533	Canola	cytosol	33.99	29.21
CDX76017	Canola	cytosol	30.07	29.11
CDX85985	Canola	mitochondrion	19.61	25.0
CDY09978	Canola	cytosol	33.99	17.81

Protein Annotations

EnsemblPlants:CDY21408	EnsemblPlantsGene:GSBRNA2T00015788001	Gene3D:3.30.70.100	GO:A0A078G9I0	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF176	PFAM:PF00403	PFscan:PS50846	ProteinID:CDY21408
ProteinID:CDY21408.1	SUPFAM:SSF55008	UniParc:UPI0004EE4818	UniProt:A0A078G9I0	MapMan:35.1	:

Description

BnaA09g30190DBnaA09g30190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9I0]

Coordinates

chrLK032120:+:524795..525598

Molecular Weight (calculated)

17178.0 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.573

Length

153 amino acids

Sequence
(BLAST)

001: MGALNFLSGY FSDHFYVSIR KRKKRKVMQQ TVNIKVKIDC DGCERKIKNA VSSMKGAKSV EVNRKMHKVT VSGYVDPKKV LKKVQSTGKK KAELWPYVPY
101: TMVAYPYAAG AYDKRAPPGF VRKSEQAQAQ PGGTDDKLMS LFSDENPNAC TIM

Best Arabidopsis Sequence Match ( AT1G22990.1 )
(BLAST)

001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM

Arabidopsis Description

HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.