Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G086300.1 | Wheat | nucleus | 94.71 | 96.66 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 95.47 | 94.51 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 90.18 | 85.24 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 65.74 | 62.59 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 34.51 | 60.62 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 34.51 | 60.62 |
| KXG28111 | Sorghum | nucleus | 59.19 | 59.64 |
| GSMUA_Achr10P... | Banana | nucleus | 35.77 | 58.68 |
| Zm00001d049000_P001 | Maize | plastid | 61.96 | 58.57 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 35.26 | 58.09 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 29.72 | 57.0 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 32.75 | 55.79 |
| KRG92484 | Soybean | nucleus | 25.19 | 52.63 |
| PGSC0003DMT400053397 | Potato | nucleus | 30.23 | 41.81 |
| Solyc01g102980.2.1 | Tomato | nucleus | 30.23 | 41.38 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 9.32 | 39.78 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 9.57 | 39.58 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 29.47 | 39.39 |
| VIT_07s0130g00240.t01 | Wine grape | nucleus | 18.89 | 37.88 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 8.82 | 37.23 |
| Bra026830.1-P | Field mustard | nucleus | 29.22 | 36.94 |
| CDY53549 | Canola | nucleus | 29.22 | 36.94 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 23.43 | 36.9 |
| CDX81638 | Canola | nucleus | 29.22 | 36.83 |
| Bra026589.1-P | Field mustard | nucleus | 27.71 | 36.67 |
| CDY09363 | Canola | nucleus | 27.46 | 36.58 |
| AT1G14440.1 | Thale cress | nucleus | 28.72 | 36.54 |
| CDY41692 | Canola | nucleus | 27.46 | 36.33 |
| Bra026219.1-P | Field mustard | nucleus | 28.21 | 36.13 |
| CDY45257 | Canola | nucleus | 28.21 | 36.01 |
| AT2G02540.2 | Thale cress | nucleus | 27.96 | 35.81 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 20.65 | 35.34 |
| CDY39311 | Canola | nucleus | 26.95 | 34.97 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 19.4 | 32.63 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 21.91 | 29.69 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 19.14 | 26.21 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 23.17 | 23.59 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 26.2 | 22.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF42 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | EnsemblPlantsGene:TraesCS4B01G089700 | EnsemblPlants:TraesCS4B01G089700.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | TIGR:cd00086 | SEG:seg |
Description
No Description!
Coordinates
chr4B:-:90891987..90893180
Molecular Weight (calculated)
42002.9 Da
IEP (calculated)
8.154
GRAVY (calculated)
-0.558
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIVQLQRR RTEAAASAAP ARSILPDREE RMDLSVPRGE FPIPMHAAAS PYGGIGGGGV AVADHAMDLH HDHANHNGQS QSQAQDMPSP PVAVSEDSSG
101: KKRAAAIAVG AGGPPVKYRE CLKNHAAAIG GNATDGCGEF MPSGEEGSLE ALKCSACGCH RNFHRKELDD FDGDSCASHG YGYGHHAVRR LLGPSVPHHH
201: KSSGGLLVTA DHYGAYAAAR ALPPPPPPPL GHHHQIIMPL NMIQTSESDE MDGSGGGGIM GDGRGGLASG GGGSSSSKKR FRTKFTAEQK GRMLEFAENV
301: GWRLQKLDDA MVQHFCQEIG VKRRVLKVWM HNNKHNLATR QPPTSPTPPQ SQSMPLAMSM PMPLGMSMPM QVPPSQPGPS GHRGPSSPHA HGELKLD
101: KKRAAAIAVG AGGPPVKYRE CLKNHAAAIG GNATDGCGEF MPSGEEGSLE ALKCSACGCH RNFHRKELDD FDGDSCASHG YGYGHHAVRR LLGPSVPHHH
201: KSSGGLLVTA DHYGAYAAAR ALPPPPPPPL GHHHQIIMPL NMIQTSESDE MDGSGGGGIM GDGRGGLASG GGGSSSSKKR FRTKFTAEQK GRMLEFAENV
301: GWRLQKLDDA MVQHFCQEIG VKRRVLKVWM HNNKHNLATR QPPTSPTPPQ SQSMPLAMSM PMPLGMSMPM QVPPSQPGPS GHRGPSSPHA HGELKLD
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.