Factsheet for Os11t0243300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0635550-00
Os02t0706600-00
Os05t0579300-01
Os08t0438400-01
Os08t0479400-01
Os09t0414600-02
Os09t0466400-01
Os11t0243300-01
Os12t0208900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	Os11t0243300-01	AT1G14440.1	16428600
AT1G14440.1	Os12t0208900-00	AT1G14440.1	16428600
AT1G14440.1	Os01t0635550-00	AT1G75240.1	16428600
AT1G14440.1	Os02t0706600-00	AT1G75240.1	16428600
AT1G14440.1	Os05t0579300-01	AT1G75240.1	16428600
AT1G14440.1	Os01t0635550-00	AT2G18350.1	16428600
AT1G14440.1	Os02t0706600-00	AT2G18350.1	16428600
AT1G14440.1	Os05t0579300-01	AT2G18350.1	16428600
AT1G14440.1	Os01t0635550-00	AT3G50890.1	16428600
AT1G14440.1	Os02t0706600-00	AT3G50890.1	16428600
AT1G14440.1	Os05t0579300-01	AT3G50890.1	16428600
AT1G14440.1	Os08t0438400-01	AT5G15210.1	16428600
AT1G14440.1	Os09t0414600-02	AT5G15210.1	16428600
AT1G14440.1	Os08t0479400-01	AT5G65410.1	16428600
AT1G14440.1	Os09t0466400-01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G086300.1	Wheat	nucleus	63.55	68.12
TraesCS4A01G226800.1	Wheat	nucleus	63.55	66.08
TraesCS4B01G089700.1	Wheat	nucleus	62.59	65.74
HORVU4Hr1G015250.6	Barley	nucleus, plastid	63.07	62.62
KXG28111	Sorghum	nucleus	58.27	61.68
Zm00001d049000_P001	Maize	plastid	61.87	61.43
GSMUA_Achr1P13300_001	Banana	nucleus	33.09	61.06
GSMUA_Achr6P28870_001	Banana	nucleus	33.09	61.06
GSMUA_Achr9P08090_001	Banana	nucleus	34.53	59.75
GSMUA_Achr10P...	Banana	nucleus	34.29	59.09
GSMUA_Achr3P16680_001	Banana	nucleus	32.61	58.37
GSMUA_Achr6P17420_001	Banana	nucleus	28.3	57.0
KRG92484	Soybean	nucleus	24.22	53.16
Os12t0208900-00	Rice	nucleus	25.66	48.2
Os09t0466400-01	Rice	nucleus	27.34	40.86
PGSC0003DMT400053397	Potato	nucleus	28.06	40.77
Os08t0479400-01	Rice	nucleus	28.3	40.69
Os09t0414600-02	Rice	nucleus	10.55	40.37
Solyc01g102980.2.1	Tomato	nucleus	28.06	40.34
Os11t0128300-01	Rice	cytosol, plastid	10.07	40.0
VIT_07s0130g00240.t01	Wine grape	nucleus	18.47	38.89
CDY09363	Canola	nucleus	27.58	38.59
CDY41692	Canola	nucleus	27.58	38.33
Bra026589.1-P	Field mustard	nucleus	27.58	38.33
Os12t0124500-01	Rice	cytosol, plastid	9.59	38.1
CDX81638	Canola	nucleus	28.54	37.78
Os08t0438100-01	Rice	cytosol	8.39	37.63
CDY53549	Canola	nucleus	28.3	37.58
Bra026830.1-P	Field mustard	nucleus	28.3	37.58
AT1G14440.1	Thale cress	nucleus	28.06	37.5
AT2G02540.2	Thale cress	nucleus	27.82	37.42
Bra026219.1-P	Field mustard	nucleus	27.34	36.77
CDY45257	Canola	nucleus	27.34	36.66
Os05t0579300-01	Rice	nucleus	22.06	36.08
CDY39311	Canola	nucleus	26.14	35.62
Os01t0635550-00	Rice	nucleus	19.66	35.34
Os04t0434500-00	Rice	nucleus	22.54	33.1
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	18.47	32.35
Os08t0438400-01	Rice	plastid	21.58	26.63
Os02t0706600-00	Rice	nucleus	27.1	26.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	ProteinID:AAX95984.1	ProteinID:ABA92344.1	EMBL:AK287714	ProteinID:BAF27957.2
ProteinID:BAT13395.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlantsGene:Os11g0243300	EnsemblPlants:Os11t0243300-01	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF42	UniProt:Q53N87	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0001C7B5D1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:

Description

zinc finger homeodomain class homeobox transcription factor 4Similar to ZF-HD protein dimerisation region containing protein, expressed. (Os11t0243300-01)

Coordinates

chr11:-:7694141..7696295

Molecular Weight (calculated)

43964.5 Da

IEP (calculated)

7.617

GRAVY (calculated)

-0.528

Length

417 amino acids

Sequence
(BLAST)

001: MVSILQLQTR TEASPASSAS AAATRIFAVR RQQQEQEGEE EEEEFEFQER MDLSGAQGEL PIPMHASAAA SPFAGMGAHG GAGGGHVVEL HRHEHVGNNG
101: QAMAMASPPP TNVAVAAEQE GSPVAGKKRG GMAVVGGGGG VAVKYRECLK NHAAAIGGNA TDGCGEFMPS GEEGSLEALK CSACGCHRNF HRKEADDLDA
201: DSCAAALRAA AGRHHHLLGP ALPHHHHKNG GGLLVAGGDP YGAAYAAARA LPPPPPPPPH GHHHHHQIIM PLNMIHTSES DEMDVSGGGG GVGRGGGSSS
301: SSKKRFRTKF TAEQKARMLE FAERVGWRLQ KLDDAMVHHF CQEIGVKRRV LKVWMHNNKH NLAKKPLPSS PPPPPQIPPM SMPPSPPPPQ IPPMSMPPSP
401: PPMPMPMPPS PPQLKLE

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.