Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0479400-01 | |
| Os09t0466400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42780.1 | Os08t0479400-01 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | Os09t0466400-01 | AT5G65410.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 75.63 | 76.27 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 74.79 | 75.42 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 74.79 | 75.42 |
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 73.11 | 74.36 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 74.79 | 74.17 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 71.43 | 73.59 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 72.27 | 71.67 |
| KRH60587 | Soybean | nucleus | 31.09 | 48.68 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 30.67 | 47.1 |
| KRH41884 | Soybean | nucleus | 29.41 | 46.05 |
| Solyc03g098060.1.1 | Tomato | nucleus | 31.09 | 41.34 |
| PGSC0003DMT400083993 | Potato | nucleus | 31.09 | 41.34 |
| Os08t0438100-01 | Rice | cytosol | 13.03 | 33.33 |
| KRH48720 | Soybean | nucleus | 30.25 | 33.03 |
| KRH38989 | Soybean | nucleus, plastid | 30.25 | 31.44 |
| Os11t0128300-01 | Rice | cytosol, plastid | 13.87 | 31.43 |
| Os05t0579300-01 | Rice | nucleus | 32.77 | 30.59 |
| Os12t0124500-01 | Rice | cytosol, plastid | 13.45 | 30.48 |
| Os09t0414600-02 | Rice | nucleus | 13.87 | 30.28 |
| Os01t0635550-00 | Rice | nucleus | 28.15 | 28.88 |
| Os04t0434500-00 | Rice | nucleus | 33.19 | 27.82 |
| Os09t0466400-01 | Rice | nucleus | 28.99 | 24.73 |
| Os08t0479400-01 | Rice | nucleus | 29.83 | 24.48 |
| AT5G42780.1 | Thale cress | nucleus | 24.79 | 24.38 |
| Os08t0438400-01 | Rice | plastid | 30.25 | 21.3 |
| Os12t0208900-00 | Rice | nucleus | 19.75 | 21.17 |
| Bra027455.1-P | Field mustard | nucleus | 25.21 | 20.91 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 32.35 | 18.47 |
| Os02t0706600-00 | Rice | nucleus | 25.63 | 14.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:9272708 | ProteinID:ABF98569.1 | ProteinID:BAH92347.1 | ProteinID:BAS86098.1 |
| ProteinID:EAZ28384.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | EnsemblPlantsGene:Os03g0718500 | EnsemblPlants:Os03t0718500-00 | PFAM:PD125774 | PFAM:PF04770 |
| PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | UniProt:Q10DV5 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | UniParc:UPI0000002734 | RefSeq:XP_015630147.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : |
Description
zinc finger homeodomain class homeobox transcription factor 11Homeodomain-related domain containing protein. (Os03t0718500-00)
Coordinates
chr3:+:29090580..29091512
Molecular Weight (calculated)
24296.6 Da
IEP (calculated)
8.012
GRAVY (calculated)
-0.648
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQQERPRE VYRECMRNHA AKLGTYANDG CCEYTPDDGH PAGLLCAACG CHRNFHRKDF LDGRATAAAG GAGGAGVGVA PMLPAPGGGG PPGYMHMAAM
101: GGAVGGGGGV DGGGGSGGRR RTRTKFTEEQ KARMLRFAER LGWRMPKREP GRAPGDDEVA RFCREIGVNR QVFKVWMHNH KAGGGGGGGG SGGPGAGGGA
201: QTSSSTTRGG GDVGVGLSPA MGGDGEDDEE VRGSEMCM
101: GGAVGGGGGV DGGGGSGGRR RTRTKFTEEQ KARMLRFAER LGWRMPKREP GRAPGDDEVA RFCREIGVNR QVFKVWMHNH KAGGGGGGGG SGGPGAGGGA
201: QTSSSTTRGG GDVGVGLSPA MGGDGEDDEE VRGSEMCM
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.