Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005931_P001 | |
| Zm00001d020774_P001 | |
| Zm00001d031840_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42780.1 | Zm00001d005931_P001 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | Zm00001d020774_P001 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | Zm00001d031840_P001 | AT5G65410.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 87.88 | 86.75 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 89.18 | 85.83 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 77.06 | 75.42 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 77.06 | 75.42 |
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 76.62 | 75.0 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 77.06 | 74.17 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 73.59 | 71.43 |
| KRH60587 | Soybean | nucleus | 30.74 | 46.71 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 31.17 | 46.45 |
| KRH41884 | Soybean | nucleus | 29.0 | 44.08 |
| PGSC0003DMT400083993 | Potato | nucleus | 30.74 | 39.66 |
| Solyc03g098060.1.1 | Tomato | nucleus | 30.74 | 39.66 |
| KRH48720 | Soybean | nucleus | 30.74 | 32.57 |
| KRH38989 | Soybean | nucleus, plastid | 31.17 | 31.44 |
| Zm00001d052395_P001 | Maize | plastid | 11.69 | 31.4 |
| Zm00001d009674_P001 | Maize | nucleus | 31.17 | 30.13 |
| Zm00001d023289_P001 | Maize | cytosol | 12.55 | 29.59 |
| Zm00001d023286_P001 | Maize | cytosol | 12.55 | 29.59 |
| Zm00001d044662_P001 | Maize | cytosol, plastid | 12.12 | 28.0 |
| Zm00001d003645_P001 | Maize | nucleus | 33.77 | 26.0 |
| Zm00001d020774_P001 | Maize | nucleus | 29.0 | 24.54 |
| Zm00001d020459_P001 | Maize | mitochondrion | 11.26 | 23.42 |
| AT5G42780.1 | Thale cress | nucleus | 24.24 | 23.14 |
| Zm00001d005931_P001 | Maize | nucleus | 28.14 | 22.73 |
| Zm00001d031840_P001 | Maize | nucleus | 29.87 | 22.4 |
| Zm00001d032177_P001 | Maize | mitochondrion | 11.26 | 21.85 |
| Zm00001d050452_P001 | Maize | mitochondrion | 11.26 | 20.47 |
| Zm00001d041780_P001 | Maize | nucleus | 30.74 | 20.34 |
| Zm00001d020460_P001 | Maize | nucleus | 31.6 | 19.73 |
| Zm00001d005757_P001 | Maize | nucleus | 30.74 | 19.67 |
| Bra027455.1-P | Field mustard | nucleus | 24.24 | 19.51 |
| Zm00001d032175_P001 | Maize | cytosol | 30.74 | 19.03 |
| Zm00001d050443_P001 | Maize | nucleus | 29.44 | 18.58 |
| Zm00001d049000_P001 | Maize | plastid | 32.9 | 18.1 |
| Zm00001d017784_P001 | Maize | nucleus | 29.44 | 16.31 |
| Zm00001d051573_P001 | Maize | nucleus | 29.87 | 15.47 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103643913 | MapMan:15.5.3.13 | UniProt:A0A060D582 | ProteinID:AIB04469.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
| ProteinID:ONM08626.1 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000221F48C | InterPro:ZF_HD_homeobox_Cys/His_dimer | EnsemblPlantsGene:Zm00001d033791 |
| EnsemblPlants:Zm00001d033791_P001 | EnsemblPlants:Zm00001d033791_T001 | SEG:seg | : | : | : |
Description
ZF-HD-transcription factor 8Zinc-finger homeodomain protein 14
Coordinates
chr1:+:273799885..273800580
Molecular Weight (calculated)
24077.2 Da
IEP (calculated)
8.122
GRAVY (calculated)
-0.687
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQQQHQERP REVYRECMRN HAAKLGTYAS DGCCEYTPDD GQPAPMLCAA CGCHRNFHRK TFLDAAAGAH GAMLPSPAGA SPGYGSGTHH TATTAAGMGG
101: DAGAHGSGGR RRTRTKFTEE QKECMARFAE RLGWRMPKRE PGRAPGDDEV GRFCREIGVT RQVFKVWMHN HKSGGGSGGA GAGAGGAAQT SSSTTRGGGS
201: GAVGGGGSMS PAICADVEDD EEVMRGSGMC M
101: DAGAHGSGGR RRTRTKFTEE QKECMARFAE RLGWRMPKRE PGRAPGDDEV GRFCREIGVT RQVFKVWMHN HKSGGGSGGA GAGAGGAAQT SSSTTRGGGS
201: GAVGGGGSMS PAICADVEDD EEVMRGSGMC M
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
Arabidopsis Description
ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.