Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23238 | Sorghum | nucleus | 77.36 | 82.32 |
| Os12t0208900-00 | Rice | nucleus | 36.96 | 58.11 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 31.23 | 52.66 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 33.81 | 52.21 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 33.52 | 51.77 |
| KRG92484 | Soybean | nucleus | 27.79 | 51.05 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 33.81 | 50.64 |
| GSMUA_Achr10P... | Banana | nucleus | 34.67 | 50.0 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 34.38 | 49.79 |
| Zm00001d020774_P001 | Maize | nucleus | 33.24 | 42.49 |
| Zm00001d005931_P001 | Maize | nucleus | 33.81 | 41.26 |
| Zm00001d052395_P001 | Maize | plastid | 10.03 | 40.7 |
| Zm00001d023286_P001 | Maize | cytosol | 11.17 | 39.8 |
| Zm00001d023289_P001 | Maize | cytosol | 11.17 | 39.8 |
| Zm00001d049000_P001 | Maize | plastid | 47.56 | 39.52 |
| Zm00001d031840_P001 | Maize | nucleus | 34.38 | 38.96 |
| PGSC0003DMT400053397 | Potato | nucleus | 30.66 | 37.28 |
| Solyc01g102980.2.1 | Tomato | nucleus | 30.95 | 37.24 |
| Zm00001d009674_P001 | Maize | nucleus | 25.5 | 37.24 |
| Zm00001d044662_P001 | Maize | cytosol, plastid | 10.03 | 35.0 |
| CDY09363 | Canola | nucleus | 28.94 | 33.89 |
| VIT_07s0130g00240.t01 | Wine grape | nucleus | 19.2 | 33.84 |
| CDY53549 | Canola | nucleus | 30.37 | 33.76 |
| Bra026830.1-P | Field mustard | nucleus | 30.37 | 33.76 |
| Bra026589.1-P | Field mustard | nucleus | 28.94 | 33.67 |
| CDY41692 | Canola | nucleus | 28.94 | 33.67 |
| CDX81638 | Canola | nucleus | 30.37 | 33.65 |
| AT1G14440.1 | Thale cress | nucleus | 29.51 | 33.01 |
| Bra026219.1-P | Field mustard | nucleus | 28.94 | 32.58 |
| CDY45257 | Canola | nucleus | 28.94 | 32.48 |
| Zm00001d020459_P001 | Maize | mitochondrion | 10.32 | 32.43 |
| Zm00001d003645_P001 | Maize | nucleus | 27.79 | 32.33 |
| AT2G02540.2 | Thale cress | nucleus | 28.08 | 31.61 |
| CDY39311 | Canola | nucleus | 27.22 | 31.05 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 20.34 | 30.74 |
| Zm00001d032177_P001 | Maize | mitochondrion | 10.32 | 30.25 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 20.34 | 29.58 |
| Zm00001d050452_P001 | Maize | mitochondrion | 10.03 | 27.56 |
| Zm00001d032175_P001 | Maize | cytosol | 26.65 | 24.93 |
| Zm00001d050443_P001 | Maize | nucleus | 25.79 | 24.59 |
| Zm00001d005757_P001 | Maize | nucleus | 25.21 | 24.38 |
| Zm00001d020460_P001 | Maize | nucleus | 25.79 | 24.32 |
| Zm00001d017784_P001 | Maize | nucleus | 28.08 | 23.5 |
| Zm00001d051573_P001 | Maize | nucleus | 28.65 | 22.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | UniProt:A0A1D6MY51 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | ProteinID:ONM33653.1 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF19 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | UniParc:UPI000844AA34 | InterPro:ZF_HD_homeobox_Cys/His_dimer | EnsemblPlantsGene:Zm00001d041780 | EnsemblPlants:Zm00001d041780_P001 | EnsemblPlants:Zm00001d041780_T001 |
| SEG:seg | : | : | : | : | : |
Description
ZF-HD-transcription factor 21Zinc-finger homeodomain protein 4
Coordinates
chr3:+:137588464..137590201
Molecular Weight (calculated)
36906.7 Da
IEP (calculated)
8.444
GRAVY (calculated)
-0.587
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKRETGAA AAEEVSKSMD LSGTQGELPM ATMHAGGSPY LGLHHGHPQQ HNHGANGRHM SPPDVVAEEA KNRQLAVVPV GTGGGGGAGV RYRECLKNHA
101: AAIGGSATDG CGEFMPAGEE GSLDALRCSA CGCHRNFHRK EPPGGDGRQL YGHHHHHPLS PLAAVHPHHH RGLLVAALPP APTRMVMPLS AAMHHHQQPP
201: QQHHSSASAD SDDAHVPGVR GGEVQQQQQA PARKRFRTKF TAEQKARMLG FAEDAGWRLQ KLDEAAVQRF CQEVGVKRRV LKVWMHNNKH TLARRGHAGL
301: PGDPELLGPH DGQLGMPLPE PAAEPAAAAA AAAGLGVTDQ AMSFGTGRH
101: AAIGGSATDG CGEFMPAGEE GSLDALRCSA CGCHRNFHRK EPPGGDGRQL YGHHHHHPLS PLAAVHPHHH RGLLVAALPP APTRMVMPLS AAMHHHQQPP
201: QQHHSSASAD SDDAHVPGVR GGEVQQQQQA PARKRFRTKF TAEQKARMLG FAEDAGWRLQ KLDEAAVQRF CQEVGVKRRV LKVWMHNNKH TLARRGHAGL
301: PGDPELLGPH DGQLGMPLPE PAAEPAAAAA AAAGLGVTDQ AMSFGTGRH
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.