Factsheet for Os01t0635550-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0635550-00
Os02t0706600-00
Os05t0579300-01
Os08t0438400-01
Os08t0479400-01
Os09t0414600-02
Os09t0466400-01
Os11t0243300-01
Os12t0208900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	Os11t0243300-01	AT1G14440.1	16428600
AT1G75240.1	Os12t0208900-00	AT1G14440.1	16428600
AT1G75240.1	Os01t0635550-00	AT1G75240.1	16428600
AT1G75240.1	Os02t0706600-00	AT1G75240.1	16428600
AT1G75240.1	Os05t0579300-01	AT1G75240.1	16428600
AT1G75240.1	Os01t0635550-00	AT3G50890.1	16428600
AT1G75240.1	Os02t0706600-00	AT3G50890.1	16428600
AT1G75240.1	Os05t0579300-01	AT3G50890.1	16428600
AT1G75240.1	Os08t0438400-01	AT5G15210.1	16428600
AT1G75240.1	Os09t0414600-02	AT5G15210.1	16428600
AT1G75240.1	Os08t0479400-01	AT5G65410.1	16428600
AT1G75240.1	Os09t0466400-01	AT5G65410.1	16428600
AT2G18350.1	Os11t0243300-01	AT1G14440.1	16428600
AT2G18350.1	Os12t0208900-00	AT1G14440.1	16428600
AT2G18350.1	Os08t0479400-01	AT5G65410.1	16428600
AT2G18350.1	Os09t0466400-01	AT5G65410.1	16428600
AT3G50890.1	Os11t0243300-01	AT1G14440.1	16428600
AT3G50890.1	Os12t0208900-00	AT1G14440.1	16428600
AT3G50890.1	Os01t0635550-00	AT1G75240.1	16428600
AT3G50890.1	Os02t0706600-00	AT1G75240.1	16428600
AT3G50890.1	Os05t0579300-01	AT1G75240.1	16428600
AT3G50890.1	Os08t0438400-01	AT5G15210.1	16428600
AT3G50890.1	Os09t0414600-02	AT5G15210.1	16428600
AT3G50890.1	Os08t0479400-01	AT5G65410.1	16428600
AT3G50890.1	Os09t0466400-01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G258400.1	Wheat	nucleus	68.1	68.1
TraesCS3D01G224100.1	Wheat	nucleus	68.53	67.37
TraesCS3A01G226100.1	Wheat	nucleus	68.1	67.23
Zm00001d009674_P001	Maize	nucleus	51.29	49.79
Os05t0579300-01	Rice	nucleus	53.02	48.24
Os11t0128300-01	Rice	cytosol, plastid	16.81	37.14
Os08t0438100-01	Rice	cytosol	14.66	36.56
Os12t0124500-01	Rice	cytosol, plastid	16.38	36.19
Os09t0414600-02	Rice	nucleus	16.38	34.86
OQU78488	Sorghum	plastid	52.59	32.71
PGSC0003DMT400009581	Potato	nucleus	37.5	30.63
CDX77960	Canola	nucleus	28.88	30.59
Bra036852.1-P	Field mustard	nucleus	28.88	30.59
Os09t0466400-01	Rice	nucleus	36.21	30.11
Solyc04g080490.2.1	Tomato	nucleus	37.5	30.0
CDX73775	Canola	nucleus	27.59	29.77
CDX90679	Canola	nucleus	30.17	28.81
CDY70550	Canola	nucleus	31.9	28.79
AT3G50890.1	Thale cress	nucleus	30.6	28.51
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	28.88	28.15
Os08t0479400-01	Rice	nucleus	34.91	27.93
CDY70108	Canola	nucleus	31.9	27.92
CDY37252	Canola	nucleus	31.03	27.59
Bra037224.1-P	Field mustard	nucleus	31.47	27.55
VIT_18s0001g12580.t01	Wine grape	nucleus	37.5	27.53
AT2G18350.1	Thale cress	nucleus	31.03	27.48
CDY62531	Canola	nucleus	31.03	27.38
CDY28987	Canola	nucleus	28.88	27.35
CDY71124	Canola	nucleus	28.88	26.07
Os04t0434500-00	Rice	nucleus	31.9	26.06
Solyc02g085160.1.1	Tomato	nucleus	31.47	24.91
KRH76785	Soybean	nucleus	33.62	24.61
Bra015857.1-P	Field mustard	nucleus	31.9	24.5
CDX85886	Canola	nucleus	31.03	24.49
Bra003759.1-P	Field mustard	nucleus	31.03	24.49
Bra008185.1-P	Field mustard	nucleus	31.03	24.49
CDY45419	Canola	nucleus	30.17	24.31
CDX68137	Canola	nucleus	31.03	24.24
PGSC0003DMT400009033	Potato	nucleus	31.47	24.17
CDX73152	Canola	nucleus	31.03	24.08
KRH08258	Soybean	nucleus	34.05	24.01
KRH69909	Soybean	nucleus	34.05	23.65
AT1G75240.1	Thale cress	nucleus	31.03	23.3
Bra012882.1-P	Field mustard	nucleus	26.29	23.02
Os02t0706600-00	Rice	nucleus	42.24	22.95
Os08t0438400-01	Rice	plastid	32.76	22.49
KRH28682	Soybean	nucleus	32.33	22.32
Os12t0208900-00	Rice	nucleus	20.69	21.62
GSMUA_Achr6P24230_001	Banana	nucleus	20.26	21.08
GSMUA_Achr3P19060_001	Banana	nucleus	21.55	20.83
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	35.34	19.66
VIT_04s0023g01880.t01	Wine grape	nucleus	33.62	18.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:9268901	ProteinID:BAD69443.1	ProteinID:BAH91207.1	ProteinID:BAS73332.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD
InterPro:IPR006456	EnsemblPlantsGene:Os01g0635550	EnsemblPlants:Os01t0635550-00	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523
PANTHER:PTHR31948	PANTHER:PTHR31948:SF17	UniProt:Q5VM82	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566
UniParc:UPI0000458127	RefSeq:XP_015622496.1	RefSeq:XP_015622497.1	RefSeq:XP_015622498.1	RefSeq:XP_015622499.1	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

zinc finger homeodomain class homeobox transcription factor 5ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein. (Os01t0635550-00)

Coordinates

chr1:-:25476388..25477555

Molecular Weight (calculated)

25384.8 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.802

Length

232 amino acids

Sequence
(BLAST)

001: MELSEHEEDA GDVGGGCSSP PTPPHRVLTS AAPETIRCRY HECLRNHAAA SGGHVVDGCG EFMPASTEEP LACAACGCHR SFHRRDPSPG RAGAARLPQL
101: HLPASINSRA PPALLLPPAA AASKQGLPFP GYGTPSGGTG TTTASSSDER LRPSPVQPRR RSRTTFTREQ KEQMLAFAER VGWRIQRQEE ATVEHFCAQV
201: GVRRQALKVW MHNNKHSFKQ KQQQENRQEQ QQ

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.