Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70550 | Canola | nucleus | 93.96 | 96.89 |
| Bra037224.1-P | Field mustard | nucleus | 95.09 | 95.09 |
| AT2G18350.1 | Thale cress | nucleus | 82.64 | 83.59 |
| CDY46298 | Canola | cytosol | 25.28 | 79.76 |
| CDY71124 | Canola | nucleus | 70.94 | 73.15 |
| CDX86404 | Canola | mitochondrion | 17.36 | 50.55 |
| CDX85228 | Canola | mitochondrion, nucleus | 16.98 | 49.45 |
| CDY21695 | Canola | mitochondrion | 15.85 | 47.73 |
| CDY26722 | Canola | mitochondrion | 15.47 | 46.59 |
| CDY19248 | Canola | mitochondrion | 15.47 | 46.59 |
| CDX81897 | Canola | mitochondrion | 15.47 | 46.59 |
| CDX83807 | Canola | mitochondrion | 15.47 | 46.59 |
| CDY20009 | Canola | mitochondrion | 16.98 | 45.92 |
| CDY00105 | Canola | mitochondrion | 16.98 | 45.92 |
| CDX73105 | Canola | mitochondrion | 16.23 | 45.74 |
| CDX96695 | Canola | mitochondrion | 15.09 | 45.45 |
| CDX96558 | Canola | mitochondrion | 15.47 | 43.62 |
| CDX68172 | Canola | mitochondrion | 15.85 | 43.3 |
| CDX85849 | Canola | mitochondrion | 15.85 | 43.3 |
| CDX88950 | Canola | nucleus | 31.7 | 40.0 |
| CDY24844 | Canola | nucleus | 31.32 | 39.52 |
| CDY37252 | Canola | nucleus | 38.87 | 39.46 |
| CDY62531 | Canola | nucleus | 38.87 | 39.16 |
| CDY08945 | Canola | nucleus | 30.94 | 39.05 |
| CDX77960 | Canola | nucleus | 31.7 | 38.36 |
| CDX73775 | Canola | nucleus | 30.94 | 38.14 |
| CDY34299 | Canola | nucleus | 31.32 | 36.89 |
| CDY03431 | Canola | nucleus | 30.19 | 35.87 |
| CDY45419 | Canola | nucleus | 38.49 | 35.42 |
| CDX90679 | Canola | nucleus | 31.32 | 34.16 |
| CDX85886 | Canola | nucleus | 37.74 | 34.01 |
| CDX68137 | Canola | nucleus | 38.11 | 34.01 |
| CDX73152 | Canola | nucleus | 38.11 | 33.78 |
| PGSC0003DMT400009581 | Potato | nucleus | 35.85 | 33.45 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 28.3 | 33.33 |
| CDX88760 | Canola | nucleus | 22.64 | 33.15 |
| Solyc04g080490.2.1 | Tomato | nucleus | 36.23 | 33.1 |
| CDY28987 | Canola | nucleus | 30.19 | 32.65 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 28.68 | 32.34 |
| Zm00001d009674_P001 | Maize | nucleus | 29.06 | 32.22 |
| CDY54719 | Canola | nucleus | 29.06 | 31.95 |
| Os01t0635550-00 | Rice | nucleus | 27.92 | 31.9 |
| CDY69628 | Canola | nucleus | 21.13 | 31.28 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 27.17 | 31.03 |
| Os05t0579300-01 | Rice | nucleus | 29.81 | 30.98 |
| CDX81284 | Canola | nucleus | 29.43 | 30.59 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 28.68 | 30.4 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 26.79 | 30.21 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 28.68 | 30.16 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 26.79 | 30.08 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 35.47 | 29.75 |
| CDY37827 | Canola | nucleus | 30.19 | 29.41 |
| CDY33960 | Canola | nucleus | 29.81 | 29.37 |
| CDY09363 | Canola | nucleus | 32.83 | 29.19 |
| CDY41692 | Canola | nucleus | 32.83 | 29.0 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 30.94 | 28.98 |
| CDY53549 | Canola | nucleus | 33.58 | 28.34 |
| GSMUA_Achr10P... | Banana | nucleus | 28.3 | 28.3 |
| CDX95914 | Canola | nucleus | 24.53 | 28.14 |
| CDX81638 | Canola | nucleus | 33.21 | 27.94 |
| CDY45257 | Canola | nucleus | 32.45 | 27.65 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 29.81 | 27.15 |
| CDX69541 | Canola | nucleus | 26.79 | 27.0 |
| CDY14559 | Canola | nucleus | 29.81 | 26.96 |
| CDY39311 | Canola | nucleus | 30.94 | 26.8 |
| CDY44079 | Canola | nucleus | 25.28 | 26.27 |
| CDY28566 | Canola | nucleus | 24.91 | 25.88 |
| CDY01760 | Canola | nucleus | 24.91 | 25.78 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 33.21 | 25.36 |
| CDY20008 | Canola | nucleus | 26.79 | 25.27 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 30.57 | 25.23 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 30.94 | 24.85 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 30.57 | 24.47 |
| CDX85059 | Canola | nucleus | 21.13 | 23.53 |
| CDY00104 | Canola | nucleus | 26.79 | 22.76 |
| CDX74428 | Canola | nucleus | 26.04 | 21.77 |
| OQU78488 | Sorghum | plastid | 29.81 | 21.18 |
| CDX85230 | Canola | nucleus | 26.79 | 20.94 |
| CDX86403 | Canola | nucleus | 26.79 | 20.64 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 30.94 | 20.6 |
| CDY56033 | Canola | nucleus | 21.51 | 20.58 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 29.43 | 20.31 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 16.6 | 19.73 |
| KXG30914 | Sorghum | nucleus | 29.81 | 19.46 |
| Os02t0706600-00 | Rice | nucleus | 30.94 | 19.2 |
| Zm00001d017784_P001 | Maize | nucleus | 29.81 | 18.94 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 16.6 | 18.33 |
| Zm00001d051573_P001 | Maize | nucleus | 30.19 | 17.94 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 30.94 | 17.79 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 30.94 | 17.63 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 30.94 | 17.63 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 28.68 | 16.49 |
| HORVU6Hr1G069070.1 | Barley | plastid | 11.32 | 10.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078JR93 | UniProt:A0A078JR93 | EnsemblPlants:CDY70108 | ProteinID:CDY70108 |
| ProteinID:CDY70108.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00096525001 |
| InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF9 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDCBA5 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | : | : | : | : | : |
Description
BnaCnng66730DBnaCnng66730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR93]
Coordinates
chrLK041198:+:1830..3173
Molecular Weight (calculated)
30589.8 Da
IEP (calculated)
9.620
GRAVY (calculated)
-1.172
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVREKKDDK IEMERRRRQS SPNQNIQDHR RPPYTYSQTA DKEKPTTKRN GSDPDPDLDI NPTSIAPAPR SYARPQTTSP TRRVSYRECQ RNHAASSGGH
101: VVDGCGEFMS SGEEGTAESL LCAACDCHRS FHRKEIDGMF VVKFNSFGHS QRPLVNRHVS PIMMSFGGGG GDPAESSTED LNRFHQALSG NGVDQFQYHP
201: KKRFRTKFNQ EQKERMFEFA EKIGWRMNKT EDEEVNRFCR EINVKRQVFK VWMHNNKQAA KKKDM
101: VVDGCGEFMS SGEEGTAESL LCAACDCHRS FHRKEIDGMF VVKFNSFGHS QRPLVNRHVS PIMMSFGGGG GDPAESSTED LNRFHQALSG NGVDQFQYHP
201: KKRFRTKFNQ EQKERMFEFA EKIGWRMNKT EDEEVNRFCR EINVKRQVFK VWMHNNKQAA KKKDM
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
Arabidopsis Description
ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.