Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 6
- nucleus 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74660.1 | CDX69541 | AT5G15210.1 | 21245844 |
| AT1G74660.1 | CDX85059 | AT5G15210.1 | 21245844 |
| AT1G74660.1 | CDX74428 | AT5G39760.1 | 21245844 |
| AT1G74660.1 | CDY56033 | AT5G39760.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003791.1-P | Field mustard | mitochondrion | 100.0 | 100.0 |
| CDX68172 | Canola | mitochondrion | 100.0 | 100.0 |
| AT1G74660.1 | Thale cress | mitochondrion | 92.78 | 88.24 |
| CDY19248 | Canola | mitochondrion | 78.35 | 86.36 |
| CDY26722 | Canola | mitochondrion | 78.35 | 86.36 |
| CDX73105 | Canola | mitochondrion | 82.47 | 85.11 |
| CDY21695 | Canola | mitochondrion | 76.29 | 84.09 |
| CDX96558 | Canola | mitochondrion | 81.44 | 84.04 |
| CDX81897 | Canola | mitochondrion | 75.26 | 82.95 |
| CDX96695 | Canola | mitochondrion | 74.23 | 81.82 |
| CDX83807 | Canola | mitochondrion | 74.23 | 81.82 |
| CDX85228 | Canola | mitochondrion, nucleus | 54.64 | 58.24 |
| CDX86404 | Canola | mitochondrion | 54.64 | 58.24 |
| CDY20009 | Canola | mitochondrion | 57.73 | 57.14 |
| CDY00105 | Canola | mitochondrion | 57.73 | 57.14 |
| CDY46298 | Canola | cytosol | 18.56 | 21.43 |
| CDY03431 | Canola | nucleus | 45.36 | 19.73 |
| CDY24844 | Canola | nucleus | 42.27 | 19.52 |
| CDX88950 | Canola | nucleus | 42.27 | 19.52 |
| CDY08945 | Canola | nucleus | 42.27 | 19.52 |
| CDY34299 | Canola | nucleus | 44.33 | 19.11 |
| CDY54719 | Canola | nucleus | 46.39 | 18.67 |
| CDX77960 | Canola | nucleus | 41.24 | 18.26 |
| CDX73775 | Canola | nucleus | 40.21 | 18.14 |
| CDX81284 | Canola | nucleus | 47.42 | 18.04 |
| CDX90679 | Canola | nucleus | 41.24 | 16.46 |
| CDY28987 | Canola | nucleus | 41.24 | 16.33 |
| CDY69628 | Canola | nucleus | 29.9 | 16.2 |
| CDX88760 | Canola | nucleus | 29.9 | 16.02 |
| CDY70550 | Canola | nucleus | 42.27 | 15.95 |
| CDY70108 | Canola | nucleus | 43.3 | 15.85 |
| CDX95914 | Canola | nucleus | 37.11 | 15.58 |
| CDY37827 | Canola | nucleus | 43.3 | 15.44 |
| CDY14559 | Canola | nucleus | 46.39 | 15.36 |
| CDY37252 | Canola | nucleus | 41.24 | 15.33 |
| CDY33960 | Canola | nucleus | 42.27 | 15.24 |
| CDY62531 | Canola | nucleus | 41.24 | 15.21 |
| CDY44079 | Canola | nucleus | 39.18 | 14.9 |
| CDY28566 | Canola | nucleus | 39.18 | 14.9 |
| CDY01760 | Canola | nucleus | 39.18 | 14.84 |
| CDY71124 | Canola | nucleus | 38.14 | 14.4 |
| CDY45419 | Canola | nucleus | 41.24 | 13.89 |
| CDX73152 | Canola | nucleus | 41.24 | 13.38 |
| CDY56033 | Canola | nucleus | 38.14 | 13.36 |
| CDX69541 | Canola | nucleus | 36.08 | 13.31 |
| CDX85886 | Canola | nucleus | 40.21 | 13.27 |
| CDY20008 | Canola | nucleus | 38.14 | 13.17 |
| CDX68137 | Canola | nucleus | 40.21 | 13.13 |
| CDY09363 | Canola | nucleus | 40.21 | 13.09 |
| CDY41692 | Canola | nucleus | 40.21 | 13.0 |
| CDY53549 | Canola | nucleus | 40.21 | 12.42 |
| CDX81638 | Canola | nucleus | 40.21 | 12.38 |
| CDY00104 | Canola | nucleus | 39.18 | 12.18 |
| CDY39311 | Canola | nucleus | 38.14 | 12.09 |
| CDY45257 | Canola | nucleus | 38.14 | 11.9 |
| CDX74428 | Canola | nucleus | 38.14 | 11.67 |
| CDX85230 | Canola | nucleus | 39.18 | 11.21 |
| CDX86403 | Canola | nucleus | 39.18 | 11.05 |
| CDX85059 | Canola | nucleus | 19.59 | 7.98 |
Protein Annotations
| EnsemblPlants:CDX85849 | EnsemblPlantsGene:GSBRNA2T00143637001 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF7 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | ProteinID:CDX85849 | ProteinID:CDX85849.1 | SEG:seg |
| TIGRFAMs:TIGR01566 | UniParc:UPI0000E6471B | MapMan:15.5.3.13 | : | : | : |
Description
BnaC06g22850D
Coordinates
chrLK031843:-:284839..285132
Molecular Weight (calculated)
10649.4 Da
IEP (calculated)
8.613
GRAVY (calculated)
-0.670
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKRQVVIKQ RSRNSNTSSS WTTTSSSATS SIRYVECQKN HAANIGGYAV DGCREFMAAG VEGTDDSLRC AACGCHRNFH RKEVNTEVVC EYSPPNA
001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA
101: NA
Arabidopsis Description
MIF1Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.