CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX81662
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY06819
CDY14559
CDY20008
CDY28566
CDY28987
CDY33749
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY68825
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39760.1	CDX81638	AT1G14440.1	16428600
AT5G39760.1	CDY39311	AT1G14440.1	16428600
AT5G39760.1	CDY45257	AT1G14440.1	16428600
AT5G39760.1	CDY53549	AT1G14440.1	16428600
AT5G39760.1	CDX81662	AT1G14687.1	21798944
AT5G39760.1	CDY33749	AT1G14687.1	21798944
AT5G39760.1	CDX95914	AT1G69600.1	16428600
AT5G39760.1	CDY01760	AT1G69600.1	16428600
AT5G39760.1	CDY28566	AT1G69600.1	16428600
AT5G39760.1	CDY44079	AT1G69600.1	16428600
AT5G39760.1	CDX73152	AT1G75240.1	16428600
AT5G39760.1	CDY37252	AT1G75240.1	16428600
AT5G39760.1	CDY45419	AT1G75240.1	16428600
AT5G39760.1	CDY62531	AT1G75240.1	16428600
AT5G39760.1	CDY70108	AT2G18350.1	16428600
AT5G39760.1	CDY70550	AT2G18350.1	16428600
AT5G39760.1	CDY71124	AT2G18350.1	16428600
AT5G39760.1	CDX85230	AT3G28920.1	16428600
AT5G39760.1	CDX86403	AT3G28920.1	16428600
AT5G39760.1	CDY00104	AT3G28920.1	16428600
AT5G39760.1	CDY20008	AT3G28920.1	16428600
AT5G39760.1	CDX73775	AT3G50890.1	16428600
AT5G39760.1	CDX77960	AT3G50890.1	16428600
AT5G39760.1	CDX90679	AT3G50890.1	16428600
AT5G39760.1	CDY28987	AT3G50890.1	16428600
AT5G39760.1	CDY06819	AT4G29350.1	21798944
AT5G39760.1	CDY68825	AT4G29350.1	21798944
AT5G39760.1	CDX69541	AT5G15210.1	16428600
AT5G39760.1	CDX85059	AT5G15210.1	16428600
AT5G39760.1	CDX69541	AT5G15210.1	21245844
AT5G39760.1	CDX85059	AT5G15210.1	21245844
AT5G39760.1	CDX69541	AT5G15210.1	21798944
AT5G39760.1	CDX85059	AT5G15210.1	21798944
AT5G39760.1	CDX74428	AT5G39760.1	16428600
AT5G39760.1	CDY56033	AT5G39760.1	16428600
AT5G39760.1	CDX74428	AT5G39760.1	21245844
AT5G39760.1	CDY56033	AT5G39760.1	21245844
AT5G39760.1	CDX81284	AT5G65410.1	16428600
AT5G39760.1	CDY14559	AT5G65410.1	16428600
AT5G39760.1	CDY33960	AT5G65410.1	16428600
AT5G39760.1	CDY37827	AT5G65410.1	16428600
AT5G39760.1	CDY54719	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025644.1-P	Field mustard	nucleus	100.0	100.0
CDY56033	Canola	nucleus	83.6	95.67
AT5G39760.1	Thale cress	nucleus	81.7	77.54
CDY00104	Canola	nucleus	63.41	64.42
CDY20008	Canola	nucleus	57.1	64.41
CDX85230	Canola	nucleus	68.14	63.72
CDX86403	Canola	nucleus	68.14	62.79
CDX69541	Canola	nucleus	44.48	53.61
CDX85059	Canola	nucleus	39.12	52.1
Solyc02g067310.2.1	Tomato	nucleus	47.32	51.37
KRH01172	Soybean	nucleus	53.63	50.3
PGSC0003DMT400035635	Potato	nucleus	48.58	50.16
KRH18475	Soybean	nucleus	52.05	49.85
Solyc02g067320.1.1	Tomato	nucleus	50.79	48.64
PGSC0003DMT400034368	Potato	nucleus	53.0	48.55
PGSC0003DMT400017840	Potato	nucleus	50.16	48.33
CDX88760	Canola	nucleus	27.44	48.07
CDY69628	Canola	nucleus	26.18	46.37
VIT_14s0108g00750.t01	Wine grape	nucleus	51.1	45.63
CDX81897	Canola	mitochondrion	12.3	44.32
KRH40099	Soybean	nucleus, plastid	42.59	43.83
CDX95914	Canola	nucleus	31.86	43.72
CDY26722	Canola	mitochondrion	11.99	43.18
CDY19248	Canola	mitochondrion	11.99	43.18
CDY21695	Canola	mitochondrion	11.99	43.18
CDX83807	Canola	mitochondrion	11.99	43.18
CDY01760	Canola	nucleus	33.12	41.02
CDX96695	Canola	mitochondrion	11.36	40.91
CDY44079	Canola	nucleus	31.86	39.61
CDY28566	Canola	nucleus	31.55	39.22
CDX96558	Canola	mitochondrion	11.36	38.3
CDX73105	Canola	mitochondrion	11.36	38.3
CDX68172	Canola	mitochondrion	11.67	38.14
CDX85849	Canola	mitochondrion	11.67	38.14
CDY08945	Canola	nucleus	25.24	38.1
CDX88950	Canola	nucleus	24.92	37.62
CDX77960	Canola	nucleus	25.87	37.44
CDX85228	Canola	mitochondrion, nucleus	10.73	37.36
CDX86404	Canola	mitochondrion	10.73	37.36
CDY24844	Canola	nucleus	24.29	36.67
CDX73775	Canola	nucleus	24.61	36.28
CDY03431	Canola	nucleus	25.24	35.87
CDY20009	Canola	mitochondrion	11.04	35.71
CDY00105	Canola	mitochondrion	11.04	35.71
CDY34299	Canola	nucleus	25.24	35.56
CDY54719	Canola	nucleus	26.18	34.44
CDX90679	Canola	nucleus	25.55	33.33
CDX81284	Canola	nucleus	26.5	32.94
CDY37827	Canola	nucleus	27.76	32.35
CDY33960	Canola	nucleus	27.44	32.34
CDY28987	Canola	nucleus	24.92	32.24
CDY37252	Canola	nucleus	25.87	31.42
CDY62531	Canola	nucleus	25.55	30.8
CDY14559	Canola	nucleus	27.13	29.35
CDY45419	Canola	nucleus	26.5	29.17
CDX85886	Canola	nucleus	26.81	28.91
CDX68137	Canola	nucleus	26.81	28.62
CDY09363	Canola	nucleus	26.81	28.52
CDX73152	Canola	nucleus	26.81	28.43
CDY41692	Canola	nucleus	26.81	28.33
CDY53549	Canola	nucleus	26.81	27.07
CDX81638	Canola	nucleus	26.81	26.98
CDY70550	Canola	nucleus	21.77	26.85
CDY45257	Canola	nucleus	26.18	26.69
CDY39311	Canola	nucleus	25.24	26.14
CDY70108	Canola	nucleus	21.77	26.04
CDY71124	Canola	nucleus	20.82	25.68
CDY46298	Canola	cytosol	6.31	23.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:A0A078CHG6	EnsemblPlants:CDX74428	ProteinID:CDX74428	ProteinID:CDX74428.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00114284001	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF47	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002544B3D	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

BnaA04g09610D

Coordinates

chrLK031801:-:199284..200539

Molecular Weight (calculated)

34367.9 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.876

Length

317 amino acids

Sequence
(BLAST)

001: MDMATHTTIT SPPKSPEPEP ETPNRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR
101: REPGNDSSIR PPPSSVAATI EYQPHHRHHP PPPPQLPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAF SGNNHHHQTG SRKRFRTKFS QFQKEKMHEF
201: ADRVGWKMQK RDEDDVREFC RQIGVDKSVL KVWMHNNKNN FNRRDIQFSV AAAGATEIHK TDNGGGGIHA PIPAGETNNN GCNELHHSVS NGGGGFDSDS
301: GGGGGAHGGD VNGSSSS

Best Arabidopsis Sequence Match ( AT5G39760.1 )
(BLAST)

001: MMDMTPTITT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH
101: RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR
201: KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG
301: GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS

Arabidopsis Description

ZHD10Zinc-finger homeodomain protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.