CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29350.1	CDX70521	AT5G13810.1	21798944
AT4G29350.1	CDX78539	AT5G13810.1	21798944
AT4G29350.1	CDY67732	AT5G13810.1	21798944
AT4G29350.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68825	Canola	cytosol	99.24	99.24
AT4G29350.1	Thale cress	cytosol	90.84	90.84
CDX82720	Canola	cytosol	89.31	89.31
CDY03344	Canola	cytosol	89.31	89.31
CDY48724	Canola	cytosol	89.31	89.31
CDX81944	Canola	cytosol	88.55	88.55
CDY35886	Canola	cytosol	88.55	88.55
CDY21648	Canola	cytosol	88.55	88.55
CDY32870	Canola	cytosol	83.97	83.97
CDY64971	Canola	cytosol	83.21	83.21
CDY11912	Canola	cytosol	78.63	78.03
CDX88579	Canola	cytosol	77.86	77.27
TraesCS7A01G107400.1	Wheat	cytosol, golgi, plastid	77.1	77.1
EES01452	Sorghum	cytosol	75.57	75.57
CDY30218	Canola	cytosol	77.1	75.37
CDY03342	Canola	cytosol	77.1	75.37
CDX81945	Canola	cytosol	77.1	75.37
CDY48612	Canola	cytosol	77.1	75.37
CDY47769	Canola	cytosol	77.1	75.37
CDY35887	Canola	cytosol	77.1	75.37
CDY06821	Canola	cytosol	77.1	75.37
Zm00001d012772_P001	Maize	cytosol	74.81	74.81
Os10t0323900-01	Rice	cytosol, plasma membrane	74.81	74.81
Os10t0323600-01	Rice	cytosol	74.81	74.81
CDY62034	Canola	cytosol	76.34	74.63
OQU78328	Sorghum	cytosol	48.09	74.12
TraesCS3B01G311200.1	Wheat	cytosol	74.05	74.05
TraesCS1B01G356700.1	Wheat	cytosol	74.05	74.05
HORVU1Hr1G075570.2	Barley	cytosol	74.05	74.05
Os06t0152100-01	Rice	extracellular	74.05	74.05
CDY14215	Canola	cytosol	75.57	73.88
Zm00001d012773_P003	Maize	cytosol	74.05	73.48
Zm00001d043523_P001	Maize	cytosol	74.05	73.48
HORVU1Hr1G075600.2	Barley	cytosol	25.19	73.33
EER87860	Sorghum	cytosol	73.28	73.28
Zm00001d038783_P001	Maize	cytosol	72.52	72.52
EES19838	Sorghum	cytosol	72.52	72.52
TraesCS7D01G101800.1	Wheat	cytosol	78.63	71.53
CDY48726	Canola	cytosol	60.31	68.7
Zm00001d010797_P001	Maize	cytosol	70.99	67.88
TraesCS3A01G277000.1	Wheat	cytosol	74.05	67.36
TraesCS1A01G343400.1	Wheat	cytosol	74.05	67.36
HORVU7Hr1G040070.1	Barley	cytosol	20.61	61.36
TraesCS3D01G277200.1	Wheat	cytosol	74.05	59.51
HORVU3Hr1G070490.1	Barley	mitochondrion	73.28	57.48
CDY03443	Canola	cytosol	29.01	56.72
HORVU7Hr1G022570.1	Barley	cytosol, plastid	77.86	56.67
CDX82721	Canola	cytosol	54.96	51.8
CDY40192	Canola	cytosol, plastid	28.24	47.44
Zm00001d036213_P002	Maize	cytosol	55.73	45.34
CDX99366	Canola	cytosol, mitochondrion, vacuole	40.46	42.74
HORVU2Hr1G073450.7	Barley	extracellular	34.35	34.62
HORVU3Hr1G070510.2	Barley	cytosol	32.82	32.33
HORVU2Hr1G048590.3	Barley	plastid	30.53	26.49
HORVU5Hr1G053460.1	Barley	cytosol, nucleus, plastid	26.72	24.31
CDY13363	Canola	peroxisome, plasma membrane, plastid	50.38	19.13

Protein Annotations

EnsemblPlants:CDY06819	EnsemblPlantsGene:GSBRNA2T00123065001	Gene3D:3.30.450.30	GO:A0A078F1R6	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	InterPro:PFN	InterPro:PFN_sf	InterPro:Profilin_CS	PANTHER:PTHR11604
PANTHER:PTHR11604:SF7	PFAM:PF00235	PRINTS:PR00392	PRINTS:PR01640	ProteinID:CDY06819	ProteinID:CDY06819.1
ScanProsite:PS00414	SMART:SM00392	SUPFAM:SSF55770	UniParc:UPI0000E648A2	MapMan:20.2.2.3	:

Description

BnaC01g09180D

Coordinates

chrLK031973:-:472329..473446

Molecular Weight (calculated)

14146.8 Da

IEP (calculated)

4.443

GRAVY (calculated)

-0.229

Length

131 amino acids

Sequence
(BLAST)

001: MSWQSYVDDH LMCDVEGNHL TSAAILGQDG SVWAQSTNFP QLKPAEIEGI KKDFEEPGHL APTGLFLGGE KYMVVQGEGG AVIRGKKGPG GVTIKKTNQA
101: FVFGIYDEPM TGGQCNLVVE RLGDYLIESD L

Best Arabidopsis Sequence Match ( AT2G19760.1 )
(BLAST)

001: MSWQSYVDDH LMCDVEGNHL TAAAILGQDG SVWAQSAKFP QLKPQEIDGI KKDFEEPGFL APTGLFLGGE KYMVIQGEQG AVIRGKKGPG GVTIKKTNQA
101: LVFGFYDEPM TGGQCNLVVE RLGDYLIESE L

Arabidopsis Description

PRO1Profilin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42449]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.